User: Thomas Maurel

gravatar for Thomas Maurel
Thomas Maurel730
Reputation:
730
Status:
Trusted
Location:
United Kingdom
Last seen:
1 month, 1 week ago
Joined:
5 years, 9 months ago
Email:
m*****@ebi.ac.uk

Bioinformatician - Ensembl Production Team

European Bioinformatics Institute (EMBL-EBI)

European Molecular Biology Laboratory

Wellcome Trust Genome Campus

Hinxton

Cambridge CB10 1SD

United Kingdom

Posts by Thomas Maurel

<prev • 114 results • page 2 of 12 • next >
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Answer: A: Retriving Annotation for HTA2.0 using biomRt
... Hello, You can either retrieve all the Affymetrix HTA2.0 mapped to the Ensembl Transcript IDs using "with_affy_hta_2_0" as follow: genes <- getBM(attributes = c("affy_hta_2_0", "ensembl_gene_id","ensembl_transcript_id","external_gene_name","entrezgene", "gene_biotype","transcript_biotype", "go ...
written 10 months ago by Thomas Maurel730
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Answer: A: biomaRt does not return entrezgene id
... Dear all,   Just to let you know that the Ensembl mirrors have now been fixed.   Thanks a lot for your patience. Kind Regards, Thomas ...
written 10 months ago by Thomas Maurel730
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Answer: A: biomaRt does not return entrezgene id
... Dear All, I am afraid that all our Ensembl mirrors have reverted back this afternoon to how they were few days ago. We are looking into this, please use www.ensembl.org in the meantime. I will let you know once everything is working again.   Apologies for any inconvenience caused. Kind Regards ...
written 10 months ago by Thomas Maurel730
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Comment: C: biomaRt does not return entrezgene id
... Hi Mike, I actually never realised this behaviour before. If this can be over ride in the biomaRt code that would be great. To over ride the automatic ensembl mirrors redirect, you can use the following flag in the URL: "?redirect=no". E.g: http://uswest.ensembl.org/index.html?redirect=no This sh ...
written 10 months ago by Thomas Maurel730
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Comment: C: Query Error: biomaRt
... Hello, The issue has now been fixed. Please let me know if you are still having problems.   Apologies for any inconvenience caused. Kind Regards, Thomas ...
written 10 months ago by Thomas Maurel730
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Comment: C: Error in getBM of biomaRt package
... Hello, The issue has now been fixed. Please let me know if you are still having problems.   Apologies for any inconvenience caused. Kind Regards, Thomas ...
written 10 months ago by Thomas Maurel730
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Comment: C: Error in getBM of biomaRt package
... Hello, The issue has now been fixed. Please let me know if you are still having problems.   Apologies for any inconvenience caused. Kind Regards, Thomas ...
written 10 months ago by Thomas Maurel730
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Comment: C: Query Error: biomaRt
... Hello, Thank you for letting us know. We are looking into fixing this issue as soon as possible. I will let you know once the issue is resolved. Apologies for any inconvenience caused. Kind Regards, ​Thomas ...
written 10 months ago by Thomas Maurel730
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Comment: C: Error in getBM of biomaRt package
... Hello, Thank you for letting us know. We are looking into fixing this issue as soon as possible. I will let you know once the issue is resolved. Apologies for any inconvenience caused. Kind Regards, ​Thomas ...
written 10 months ago by Thomas Maurel730
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Answer: A: Ensembl 88 is out!
... Dear Alex, The issue has now been fixed on the www.ensembl.org website, our ensembl asia, useast and uswest mirrors will be updated as soon as possible. You are right, we have renamed the "EntrezGene ID" filters and attribute to "NCBI ID(s)" to match what we display on the ensembl website. The filt ...
written 10 months ago by Thomas Maurel730

Latest awards to Thomas Maurel

Scholar 10 months ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Centurion 10 months ago, created 100 posts.
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: biomaRt: no access to Ensembl_75 (GRCh37.p13)
Scholar 22 months ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Appreciated 2.7 years ago, created a post with more than 5 votes. For Ensembl release 80 is out!
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: how to use biomaRt with ensembl build 37
Appreciated 2.8 years ago, created a post with more than 5 votes. For Ensembl release 80 is out!
Teacher 3.3 years ago, created an answer with at least 3 up-votes. For A: how to use biomaRt with ensembl build 37
Scholar 3.3 years ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Autobiographer 3.4 years ago, has more than 80 characters in the information field of the user's profile.

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