User: Grimes Mark

gravatar for Grimes Mark
Grimes Mark40
Reputation:
40
Status:
New User
Location:
United States
Last seen:
3 years, 6 months ago
Joined:
7 years, 4 months ago
Email:
m**********@mso.umt.edu

Posts by Grimes Mark

<prev • 7 results • page 1 of 1 • next >
0
votes
3
answers
1.6k
views
3
answers
Answer: A: Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
... Paul   Copied and pasted from your post: runApp(system.file(package="RefNet", "apps"), port=9999)) Error: unexpected ')' in "runApp(system.file(package="RefNet", "apps"), port=9999))" Odd error. Try this runApp(system.file(package="RefNet", "apps"), port=9999) Error: could not find function " ...
written 5.0 years ago by Grimes Mark40
0
votes
2
answers
996
views
2
answers
Answer: A: Problems with RefNet hanging
... Paul   Thanks for your reply.  My normal workflow with web-based interaction queries (STRING, GeneMANIA, etc.) involves copying and pasting a list of gene names and setting the number of non-queried genes returned to 0, 10, 20, etc.     Thanks for addressing the unexpected hang issue somehow. I ...
written 5.0 years ago by Grimes Mark40
0
votes
2
answers
996
views
2
answers
Problems with RefNet hanging
... Problems with RefNet I am getting timeout and other errors when sending  a group of genes to RefNet.  In summary, simple queries work, more complex ones hang and return errors.  The worst part is that my browser becomes dysfunctional for a while afterwards. Even if R is not showing activity after a ...
software error written 5.1 years ago by Grimes Mark40
0
votes
1
answer
457
views
1
answer
DAVIDQuery
... Dear DAVID enthusiasts I note here (http://david.abcc.ncifcrf.gov/content.jsp?file=WS.html that programming) that interfaces to DAVID via Java, Perl, Python and Matlab are now supported, which is good. I also note that the R package, DAVIDQuery uses a kind of html-scrubbing technique (http://www.b ...
davidquery written 6.7 years ago by Grimes Mark40 • updated 6.6 years ago by Day, Roger S60
0
votes
3
answers
995
views
3
answers
Answer: A: GO enrichment significance
... Kasper Hansen RGraphviz failed to install with R 2.15.1 biocInstaller v 1.4.7 (see below). Mark Grimes library(GOFunction) Loading required package: Rgraphviz Error : .onLoad failed in loadNamespace() for 'Rgraphviz', details: call: value[[3L]](cond) error: unable to load shared object '/Lib ...
written 7.3 years ago by Grimes Mark40
0
votes
3
answers
995
views
3
answers
Answer: A: GO enrichment significance
... Jack The topGO and GOFunction libraries will install using biocLite after setting source to bioconductor as instructed on the bioconductor web pages for these packages. It doesn't work installing them directly from a CRAN mirror. However, for GOFunction I get the error: 'package "RGraphviz" could ...
written 7.3 years ago by Grimes Mark40
0
votes
3
answers
995
views
3
answers
GO enrichment significance
... Dear People Paul Shannon suggested I submit the following question to this list. I am investigating clustering techniques and would like to know whether GO term enrichment can be used as an external evaluation to determine whether clusters are any different from a random selection of genes from my ...
go clustering cancer lung written 7.4 years ago by Grimes Mark40

Latest awards to Grimes Mark

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 197 users visited in the last hour