User: Schott, Johanna

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7 years, 2 months ago
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7 years, 4 months ago
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j*******@dkfz-heidelberg.de

Posts by Schott, Johanna

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Comment: C: easyRNASeq package: error when summarizing per gene
... Dear Nico, thank you so much for your rapid reply! I found the problem: UCSC aligns some transcripts twice to the genome, when it is not clear where they actually come from. These transcripts have coordinates on two different chromosomes in the refGene table, and I guess that's why the gene model ...
written 7.2 years ago by Schott, Johanna20
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Seperate quantile normalization but common probe summary by median polish (oligo package)?
... Dear list, I am pre-processing Affymetrix Mouse Gene 1.0 ST Arrays and use the oligo package. I do not want to quantile normalize them all together, because my samples come from different polysome fractions or compartments of the cell, and therefore show consistent and biologically meaningful diff ...
normalization probe oligo frma frmatools written 7.3 years ago by Schott, Johanna20

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