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2
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0
replies
288
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Comment:
Comment: Right way to pseudobulk donors across replicates in edgeR
24 days ago
Yunshun Chen
▴ 840
1
vote
1
reply
398
views
Answer:
Answer: edgeR: Time course RNA-seq experiments
5 months ago
Yunshun Chen
▴ 840
1
vote
1
reply
2.1k
views
Answer:
Answer: Error in DGEList(counts = cnt, group = group) : non-numeric values found in c
11 months ago
Yunshun Chen
▴ 840
1
vote
1
reply
954
views
Comment:
Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
17 months ago
Yunshun Chen
▴ 840
0
votes
1
reply
954
views
Comment:
Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
17 months ago
Yunshun Chen
▴ 840
0
votes
2
replies
954
views
Answer:
Answer: statistics : edger or DESeq2 to asses the differential binding using the averag
17 months ago
Yunshun Chen
▴ 840
2
votes
0
replies
1.2k
views
Answer:
Answer: filterbyexp() in edgeR
2.1 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
1.0k
views
Job:
Postdoctoral Scientist in Statistical Bioinformatics, WEHI, Melbourne, Australia
JobPosting
2.4 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
3.7k
views
Answer:
Answer: differential expression for Single-cell RNAseq data using edgeR
2.7 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
803
views
Comment:
Comment: Confusion using edgeR and spline-fitted data
2.8 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
803
views
Answer:
Answer: Confusion using edgeR and spline-fitted data
2.8 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
673
views
Answer:
Answer: edgeR & blocking with complex experimental design
2.9 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
1.6k
views
Answer:
Answer: How can I get a list of the DE genes from edgeR?
3.1 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
843
views
Answer:
Answer: Help creating a paired sample design matrix in edgeR
3.1 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
2.6k
views
Comment:
Comment: Calculation of logFC in edgeR
3.2 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
2.6k
views
Answer:
Answer: Calculation of logFC in edgeR
3.2 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
1.2k
views
Comment:
Comment: edgeR model matrix with 3 factors and interactions
3.2 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
1.2k
views
Comment:
Comment: edgeR model matrix with 3 factors and interactions
3.2 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
808
views
Answer:
Answer: Question regarding lib.sizes when using glmQLFit
3.2 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
624
views
Answer:
Comment: Additive Model for Variable Adjustment in edgeR
3.3 years ago
Yunshun Chen
▴ 840
3
votes
1
reply
1.9k
views
Answer:
Answer: edgeR supports continuous covariates?
3.4 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
2.1k
views
Comment:
C: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
3.4 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
2.1k
views
Comment:
C: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
3.4 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
2.1k
views
Comment:
C: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
3.4 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
2.1k
views
Answer:
A: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
3.5 years ago
Yunshun Chen
▴ 840
2
votes
0
replies
7.5k
views
Comment:
C: how to understand cpm=1 and how filterByExpr works?
3.6 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
1.7k
views
Answer:
A: "Error in xy.coords(x, y, setLab = FALSE) : 'x' and 'y' lengths differ" using gl
3.7 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
497
views
Answer:
A: edgeR DGEList model matrix and experiment design
4.0 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
1.2k
views
Answer:
A: RNAseq analysis with edgeR-interaction terms and comparison within and between g
4.0 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
3.1k
views
Answer:
A: Including multiple covariates in edgeR
4.1 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
1.0k
views
Comment:
C: EdgeR - How to define a group when calculating BCV
4.1 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
1.0k
views
Answer:
A: EdgeR - How to define a group when calculating BCV
4.1 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
1.6k
views
Comment:
C: adding "symbol" column in my differential expressed genes in EdgeR
4.4 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
1.6k
views
Answer:
A: adding "symbol" column in my differential expressed genes in EdgeR
4.4 years ago
Yunshun Chen
▴ 840
2
votes
0
replies
1.7k
views
Answer:
A: interpreting FC values from glmTreat, especially unshrunk log-fold-changes
4.4 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
645
views
Answer:
A: Nested Interaction in edgeR and composition bias
4.4 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
687
views
Answer:
A: EdgeR DGElist - equal counts between treatment and control incorrectly give sign
4.4 years ago
Yunshun Chen
▴ 840
3
votes
1
reply
519
views
Answer:
A: Can't get function plotExonJunc to work?
4.5 years ago
Yunshun Chen
▴ 840
5
votes
2
replies
1.6k
views
Answer:
A: EdgeR - Complex design - contrasts/coefficients
4.5 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
1.2k
views
Answer:
A: is our edgeR code doing what we think it does?
4.6 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
2.6k
views
Answer:
A: edgeR DGEList and design matrix
4.6 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
3.2k
views
Answer:
A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
7.7 years ago • updated 7.6 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
1.7k
views
Answer:
A: problems when installing edgeR
7.6 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
987
views
Answer:
A: Treat p > 1
7.8 years ago
Yunshun Chen
▴ 840
1
vote
2
replies
4.2k
views
Comment:
C: Setting up the Design Matrix
8.2 years ago
Yunshun Chen
▴ 840
2
votes
2
replies
4.2k
views
Answer:
A: Setting up the Design Matrix
8.2 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
1.3k
views
Comment:
C: edgeR no residual degrees of freedom for a specific row of numbers in dispCoxRei
8.2 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
2.7k
views
Comment:
C: edgeR for with no Replicate
8.3 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
2.7k
views
Answer:
A: edgeR for with no Replicate
8.3 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
1.7k
views
Answer:
A: ANOVA in EdgeR
8.3 years ago
Yunshun Chen
▴ 840
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