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440
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Answer:
Answer: edgeR: Time course RNA-seq experiments
6 months ago
Yunshun Chen
▴ 840
1
vote
1
reply
2.2k
views
Answer:
Answer: Error in DGEList(counts = cnt, group = group) : non-numeric values found in c
12 months ago
Yunshun Chen
▴ 840
0
votes
2
replies
989
views
Answer:
Answer: statistics : edger or DESeq2 to asses the differential binding using the averag
18 months ago
Yunshun Chen
▴ 840
2
votes
0
replies
1.2k
views
Answer:
Answer: filterbyexp() in edgeR
2.2 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
3.9k
views
Answer:
Answer: differential expression for Single-cell RNAseq data using edgeR
2.8 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
833
views
Answer:
Answer: Confusion using edgeR and spline-fitted data
2.9 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
692
views
Answer:
Answer: edgeR & blocking with complex experimental design
3.0 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
1.7k
views
Answer:
Answer: How can I get a list of the DE genes from edgeR?
3.2 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
886
views
Answer:
Answer: Help creating a paired sample design matrix in edgeR
3.2 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
2.7k
views
Answer:
Answer: Calculation of logFC in edgeR
3.2 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
832
views
Answer:
Answer: Question regarding lib.sizes when using glmQLFit
3.3 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
638
views
Answer:
Comment: Additive Model for Variable Adjustment in edgeR
3.4 years ago
Yunshun Chen
▴ 840
3
votes
1
reply
2.0k
views
Answer:
Answer: edgeR supports continuous covariates?
3.5 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
2.2k
views
Answer:
A: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
3.5 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
1.8k
views
Answer:
A: "Error in xy.coords(x, y, setLab = FALSE) : 'x' and 'y' lengths differ" using gl
3.7 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
515
views
Answer:
A: edgeR DGEList model matrix and experiment design
4.1 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
1.2k
views
Answer:
A: RNAseq analysis with edgeR-interaction terms and comparison within and between g
4.1 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
3.2k
views
Answer:
A: Including multiple covariates in edgeR
4.2 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
1.1k
views
Answer:
A: EdgeR - How to define a group when calculating BCV
4.2 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
1.7k
views
Answer:
A: adding "symbol" column in my differential expressed genes in EdgeR
4.4 years ago
Yunshun Chen
▴ 840
2
votes
0
replies
1.8k
views
Answer:
A: interpreting FC values from glmTreat, especially unshrunk log-fold-changes
4.4 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
669
views
Answer:
A: Nested Interaction in edgeR and composition bias
4.5 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
708
views
Answer:
A: EdgeR DGElist - equal counts between treatment and control incorrectly give sign
4.5 years ago
Yunshun Chen
▴ 840
3
votes
1
reply
542
views
Answer:
A: Can't get function plotExonJunc to work?
4.6 years ago
Yunshun Chen
▴ 840
5
votes
2
replies
1.7k
views
Answer:
A: EdgeR - Complex design - contrasts/coefficients
4.6 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
1.2k
views
Answer:
A: is our edgeR code doing what we think it does?
4.6 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
2.7k
views
Answer:
A: edgeR DGEList and design matrix
4.7 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
3.2k
views
Answer:
A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
7.7 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
1.7k
views
Answer:
A: problems when installing edgeR
7.7 years ago
Yunshun Chen
▴ 840
1
vote
0
replies
1.0k
views
Answer:
A: Treat p > 1
7.9 years ago
Yunshun Chen
▴ 840
2
votes
2
replies
4.2k
views
Answer:
A: Setting up the Design Matrix
8.3 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
2.7k
views
Answer:
A: edgeR for with no Replicate
8.3 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
1.8k
views
Answer:
A: ANOVA in EdgeR
8.4 years ago
Yunshun Chen
▴ 840
2
votes
0
replies
3.3k
views
Answer:
A: Different results in edgeR using simple vs GLM
8.5 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
1.4k
views
Answer:
A: negative values for trended dispersion with edgeR
8.6 years ago
Yunshun Chen
▴ 840
2
votes
1
reply
1.9k
views
Answer:
A: edgeR analysis of effect of treatments within time points
8.6 years ago
Yunshun Chen
▴ 840
4
votes
0
replies
16k
views
Answer:
C: Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
9.5 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
2.0k
views
Answer:
A: tagwise parameters for negative binomial distribution in edgeR
10.1 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
3.8k
views
Answer:
A: edgeR design matrix, one group vs average of other groups
10.1 years ago
Yunshun Chen
▴ 840
1
vote
1
reply
3.8k
views
Answer:
A: edgeR design matrix, one group vs average of other groups
10.1 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
2.5k
views
Answer:
A: EdgeR classic vs. glm
10.1 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
2.5k
views
Answer:
A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
10.1 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
1.4k
views
Answer:
A: limma for time course dataset 2
10.2 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
1.4k
views
Answer:
A: limma for time course dataset 2
10.2 years ago
Yunshun Chen
▴ 840
0
votes
0
replies
1.4k
views
Answer:
A: limma for time course dataset 2
10.2 years ago
Yunshun Chen
▴ 840
0
votes
1
reply
2.8k
views
Answer:
A: edgeR: DE summary of decideTestsDGE
11.7 years ago
Yunshun Chen
▴ 840
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