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Comment: C: edgeR and gene filtering
7.7 years ago Yunshun Chen ▴ 790
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Comment: C: edgeR analysis of effect of treatments within time points
7.7 years ago Yunshun Chen ▴ 790
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Answer: A: negative values for trended dispersion with edgeR
7.7 years ago Yunshun Chen ▴ 790
2
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Answer: A: edgeR analysis of effect of treatments within time points
7.7 years ago Yunshun Chen ▴ 790
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Comment: C: edgeR glmLRT with test="F"?
8.0 years ago Yunshun Chen ▴ 790
3
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Comment: C: Appropriate use of the function treat of the limma package
8.2 years ago Yunshun Chen ▴ 790
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Answer: C: Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
8.6 years ago Yunshun Chen ▴ 790
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1.6k
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Answer: A: tagwise parameters for negative binomial distribution in edgeR
9.2 years ago Yunshun Chen ▴ 790
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3.3k
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Answer: A: edgeR design matrix, one group vs average of other groups
9.2 years ago Yunshun Chen ▴ 790
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3.3k
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Answer: A: edgeR design matrix, one group vs average of other groups
9.3 years ago Yunshun Chen ▴ 790
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2.3k
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Answer: A: EdgeR classic vs. glm
9.3 years ago Yunshun Chen ▴ 790
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Comment: C: Questiond about the descrepancy between edgeR and limma-voom
9.3 years ago Yunshun Chen ▴ 790
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2.2k
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Answer: A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
9.3 years ago Yunshun Chen ▴ 790
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3
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1.9k
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Questiond about the descrepancy between edgeR and limma-voom
RNASeq edgeR RNASeq edgeR
updated 9.3 years ago by ▴ 360 • written 9.3 years ago by ▴ 790
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1.1k
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Comment: C: Problem in limma-voom
9.3 years ago Yunshun Chen ▴ 790
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5
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1.1k
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Problem in limma-voom
limma limma
updated 9.3 years ago by ▴ 360 • written 9.3 years ago by ▴ 790
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1.6k
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edgeR: regarding Poisson distribution and goodness of
Normalization graph edgeR Normalization graph edgeR
9.3 years ago Yunshun Chen ▴ 790
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1.1k
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Answer: A: limma for time course dataset 2
9.3 years ago Yunshun Chen ▴ 790
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1.1k
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Answer: A: limma for time course dataset 2
9.3 years ago Yunshun Chen ▴ 790
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1.1k
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Answer: A: limma for time course dataset 2
9.3 years ago Yunshun Chen ▴ 790
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1
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2.5k
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Answer: A: edgeR: DE summary of decideTestsDGE
10.8 years ago Yunshun Chen ▴ 790
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