User: Andrzej Oleś

gravatar for Andrzej Oleś
Andrzej Oleś720
Reputation:
720
Status:
Trusted
Location:
Heidelberg, Germany
Website:
https://github.com/aoles
Twitter:
andrzejkoles
Scholar ID:
Google Scholar Page
Last seen:
1 month, 2 weeks ago
Joined:
5 years, 11 months ago
Email:
a***********@embl.de

Posts by Andrzej Oleś

<prev • 83 results • page 2 of 9 • next >
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Comment: C: no floating figures with biocstyle
... Is your source a .Rnw or a .Rmd file? ...
written 11 months ago by Andrzej Oleś720
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Comment: C: Bioconductor packages now each have a DOI.
... Another one: when are the DOIs assigned, are they available as soon as the package gets accepted and its landing page is created? ...
written 13 months ago by Andrzej Oleś720
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Comment: C: Bioconductor packages now each have a DOI.
... Does the DOI resolve to package short URL in the form http://bioconductor.org/packages/Biobase such that it can be used with packages which have been newly added to devel but haven't made it to release yet? ...
written 13 months ago by Andrzej Oleś720
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Comment: C: Bioconductor / COHCAP GitHub Update
... Did you run the git remote add command in the package root dir? I see a similar error message when I try to run a git command but I've forgotten to cd into the package directory. ...
written 13 months ago by Andrzej Oleś720
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Answer: A: Updates to BiocStyle formatting
... As announced previously, the style functions have been updated to the new formatting in BiocStyle version 2.5.19. Package maintainers who already use the new style (latex2, pdf_document2 or html_document2) are now encouraged to update their vignettes by stripping the trailing "2" from BiocStyle fun ...
written 13 months ago by Andrzej Oleś720
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Comment: C: Updates to BiocStyle formatting
... BiocStyle::html_document is Bioconductor's standard format for authoring both package vignettes and more general documents such as training materials etc. There are currently no plans on extending rmarkdown::html_vignette. ...
written 13 months ago by Andrzej Oleś720
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News: Updates to BiocStyle formatting
... Dear Bioconductor Developers, We would like that in the next release most of the vignettes which use BiocStyle benefit from the updated formatting introduced over the last year. For this, all BiocStyle format functions will be switched to the new style. This transition will happen on Friday, August ...
news biocstyle vignettes rmarkdown latex written 13 months ago by Andrzej Oleś720
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Answer: A: Duplicated author affiliations in BiocStyle-based HTML document
... Good catch Aaron! Indeed, there was a bug in the BiocStyle function parsing author affiliations, which occurred in the special case when all authors had the same number of affiliations. This is now fixed in both devel and release. ...
written 14 months ago by Andrzej Oleś720
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Comment: C: Using BiocStyle with plotly
... The actual width of BiocStyle's figures produced by the fig.wide = TRUE code chunks is 648 pixels, so you could use the rounded up value of 650 pixels. For the regular and small figures the width is 518 and 323 pixels, respectively. The height of the figures depends on their aspect ratio, with the d ...
written 14 months ago by Andrzej Oleś720
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Answer: A: Using BiocStyle with plotly
... Hi Lluís, thanks for your feedback! I had a look into sizing of plotly::ggplotly output and it seems that this is a more general issue which is present also for regular html_document format,  and not something specific to BiocStyle. The thing is that the produced output has fixed size and does not ...
written 14 months ago by Andrzej Oleś720

Latest awards to Andrzej Oleś

Popular Question 5 months ago, created a question with more than 1,000 views. For Updates to BiocStyle formatting
Appreciated 15 months ago, created a post with more than 5 votes. For Updates to BiocStyle formatting
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWo
Scholar 15 months ago, created an answer that has been accepted. For A: EBImage read png causes R to crash
Supporter 15 months ago, voted at least 25 times.
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Only 1s created by erode()
Scholar 15 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Only 1s created by erode()
Scholar 15 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 2.4 years ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 2.4 years ago, created an answer that has been accepted. For A: EBImage read png causes R to crash
Scholar 2.4 years ago, created an answer that has been accepted. For A: Not able to display actual grayscale image using EBImage
Scholar 2.4 years ago, created an answer that has been accepted. For A: reactive CellCODE heatmap
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: Only 1s created by erode()
Scholar 2.5 years ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 2.8 years ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 3.2 years ago, created an answer that has been accepted. For A: EBImage crashing in for-loop

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