User: Jose Duarte

gravatar for Jose Duarte
Jose Duarte100
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Posts by Jose Duarte

<prev • 10 results • page 1 of 1 • next >
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Answer: A: webbioc upload manager error
... On Fri, 2005-01-21 at 01:18, Jacob Michaelson wrote: > I've got the pages up and running, but I've hit a roadblock pretty > early on. When I try to start a new session in the upload manager, I > simply get a "Error: Couldn't create new session" message. > >From my experience this c ...
written 14.9 years ago by Jose Duarte100
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Comment: C: Installing bioconductor from behind a firewall
... I've come across this problem in the past to install BioC in our linux cluster (in a private network). The best solution I found was mirroring the whole www.bioconductor.org web site with wget and changing the pointer for www.bioconductor.org to the internal mirrored server. Of course this is usefu ...
written 15.3 years ago by Jose Duarte100
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Comment: C: gcrma()/rma() error
... What versions are you on? I hadn't had a look at this since my original posting back in April but having tried again now it seems that the problem is gone for me using R 1.9.0 and affy 1.4.30. Cheers Jose On Fri, 2004-06-18 at 12:42, Michael Seewald wrote: > It seems, I found the reason: > ...
written 15.5 years ago by Jose Duarte100
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Problem with ReadAffy
... I am having trouble after installing R 1.9 and the latest affy (1.4.29) with reading CEL files with the ReadAffy function. This is what I am getting: > files<-c("file1.CEL","file2.CEL","file3.CEL") > myaffybatch<-ReadAffy(filenames=files) Error in ReadAffy(filenames = files) : ...
affy written 15.6 years ago by Jose Duarte100
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Answer: A: GO problems with annaffy
... Paolo We had this problem before with the version 1.5 of the metadata packages. See the previous thread in this list: https://www.stat.math.ethz.ch/pipermail/bioconductor/2004-March/004139 .html The solution for me was upgrading to the devel version of annaffy and annotate. Cheers Jose On Thu ...
written 15.7 years ago by Jose Duarte100
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rma() error
... Hi all I've got the file test.R with the following code: filenames <- c("1M2W050304.CEL", "2M2W050304.CEL", "3M2W050304.CEL", "1M1W050304.CEL", "1M3W050304.CEL") filepath <- "/net/array/WormDystrophy" samples <- c("1M2W050304.CEL", "2M2W050304.CEL", "3M2W050304.CEL", "1M1W050304.CEL", "1M ...
affy written 15.7 years ago by Jose Duarte100
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Comment: C: MOE430 A and B
... It did the trick for me. I installed the dev version of annaffy which also required the latest annotate. After upgrading both everything worked fine. Thanks for all your help Jose On Tue, 2004-03-16 at 17:25, Aedin wrote: > Thanks, > I tried this, but the dev version of annaffy requires uti ...
written 15.7 years ago by Jose Duarte100
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Comment: C: MOE430 A and B
... I am getting exactly the same error in aafGO: > a<-aafGO(probeids,"moe430a") Error in exists(num, GOBPID2TERM) : Object "GOBPID2TERM" not found This is when using version 1.5.0 of the moe430a metadata package. In a different machine with version 1.4.0 this works alright. annaffy version is 1 ...
written 15.7 years ago by Jose Duarte100
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GO analysis
... Hi I would like to do some post annotation analysis on my gene list from an Affy experiment. Basically we want to see if the set of genes has any statistically over represented GO ids in comparison to the total of the genes in the chip. An over representation probability should be given to each of ...
genetics annotation go written 16.0 years ago by Jose Duarte100 • updated 16.0 years ago by Ramon Diaz1.1k
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webbioc and multtest
... I'm getting an error while using webbioc in the multtest step. All works fine when doing a two-sample t-test (equal or unequal variances) and choosing "abs" or "upper" as Rejection region. However when choosing "lower" I get the following error back: Error in pt(teststat, df1, df2, lower.tail = ...
genetics multtest webbioc written 16.0 years ago by Jose Duarte100

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