User: Wim Kreinen

gravatar for Wim Kreinen
Wim Kreinen100
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100
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New User
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Last seen:
5 years, 11 months ago
Joined:
6 years, 3 months ago
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w*******@gmail.com

Posts by Wim Kreinen

<prev • 8 results • page 1 of 1 • next >
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Comment: C: transport mcols from one GRange obejct to another
... Thank you This works: idx = match(names(gr2), names(gr1)) mcols(gr2) <- mcols(gr1)[idx,] Thanks again Wim 2013/4/27 Martin Morgan > On 04/26/2013 03:33 PM, Wim Kreinen wrote: > >> Hello, >> >> I have 2 GRange objects gr1 and gr2 (with the same names but in a > ...
written 5.9 years ago by Wim Kreinen100
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transport mcols from one GRange obejct to another
... Hello, I have 2 GRange objects gr1 and gr2 (with the same names but in a different order!) and I would like to "transport" the mcols of gr1 to gr2 - of course suitable for the names. Please ignore IRanges data. The problem must be solved only via the names. gr1 GRanges with 5 ranges and 2 metadat ...
iranges written 5.9 years ago by Wim Kreinen100 • updated 5.9 years ago by Martin Morgan ♦♦ 23k
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biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
... Hello, I am not able to install TxDb.Hsapiens... and other packages and I don't understand why. With biocLite() for instance I installed wkreinen@nord:~/R/x86_64-pc-linux-gnu-library/2.15$ ls ALL bitops evaluate hexbin labeling munsell reshape2 SparseM Annotat ...
bsgenome hexbin iranges genomeintervals genomicranges girafe rsamtools hitc written 6.0 years ago by Wim Kreinen100 • updated 6.0 years ago by Dan Tenenbaum8.2k
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import.chain: where are the chain files?
... Hi, where do I find the chain files, e.g. hg18ToHg19.over.chain? Thanks Wim > sessionInfo() R version 2.15.2 (2012-10-26) Platform: i686-pc-linux-gnu (32-bit) locale: [1] LC_CTYPE=de_DE.UTF-8 LC_NUMERIC=C [3] LC_TIME=de_DE.UTF-8 LC_COLLATE=de_DE.UTF-8 [5] LC_MONETARY=de_DE.UTF ...
written 6.1 years ago by Wim Kreinen100 • updated 6.1 years ago by Vincent J. Carey, Jr.6.3k
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Comment: C: subset GRanges
... Thanks. Thats it. Wim 2013/1/10 Steve Lianoglou > Hi, > > On Wed, Jan 9, 2013 at 3:23 PM, Wim Kreinen wrote: > > Hello, > > > > I have a GRanges object gr comprising all (human) chromosomes. And now I > > would like to retrieve all ranges of one special chromosom ...
written 6.2 years ago by Wim Kreinen100
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subset GRanges
... Hello, I have a GRanges object gr comprising all (human) chromosomes. And now I would like to retrieve all ranges of one special chromosome (e.g. Chromosome 11). I dont find a way neither with window, subset or seqselect. How does it work? Thanks Wim [[alternative HTML version deleted]] ...
written 6.2 years ago by Wim Kreinen100 • updated 6.2 years ago by Steve Lianoglou12k
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Answer: A: all human gene coordinates
... Thanks, is there a method to get all protein coding transcripts. With your method I get microRNAs as well. Thanks Wim 2012/12/5 Steve Lianoglou > Hi Wim, > > Please keep emails on the bioc list by hitting "reply all" -- this way > you can get more (and better help) by having more eye ...
written 6.3 years ago by Wim Kreinen100
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all human gene coordinates
... Dear list, I am completly new to bioconductor and R. And I am looking for a tool (library) that provides the coordinates for all human genes. Does it exist? Thanks Wim [[alternative HTML version deleted]] ...
written 6.3 years ago by Wim Kreinen100

Latest awards to Wim Kreinen

Great Question 5.9 years ago, created a question with more than 5,000 views. For subset GRanges
Popular Question 5.9 years ago, created a question with more than 1,000 views. For biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
Popular Question 5.9 years ago, created a question with more than 1,000 views. For all human gene coordinates
Popular Question 5.9 years ago, created a question with more than 1,000 views. For subset GRanges

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