User: Mirza, Nasir

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Mirza, Nasir40
Reputation:
40
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New User
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Last seen:
6 years, 4 months ago
Joined:
6 years, 10 months ago
Email:
n**********@liverpool.ac.uk

Posts by Mirza, Nasir

<prev • 4 results • page 1 of 1 • next >
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graphite package
... Hi In this package, runTopologyGSAMulti function does not work. I get the message: Error: could not find function "runTopologyGSAMulti" I am able to get the runTopologyGSA function to work properly. I would be grateful if anyone can suggest a solution. Thank you Nasir ...
written 6.4 years ago by Mirza, Nasir40 • updated 6.4 years ago by Dan Tenenbaum8.2k
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Loading eSet.r objects from ArrayExpress
... Hello For some datasets, ArrayExpress provides ExpressionSet objects with extensions eSet.r. I am unable to load these, getting the following type of errors (two examples): Example #1: > source("C:\\Users\\Nasir\\Downloads\\E-MEXP-744.eSet.r") Error in source("C:\\Users\\Nasir\\Downloads\\E-ME ...
arrayexpress written 6.7 years ago by Mirza, Nasir40
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Adjusting microarray data using ComBat and SVA
... Hello My microarrays were processed in batches. I would like to remove batch effect using ComBat. But I also want to adjust for unknown sources of noise using sva. Is there a way of combining these two methods? I could run ComBat first, get the ComBat-adjusted matrix, and run sva on this, but I am ...
sva written 6.8 years ago by Mirza, Nasir40 • updated 3.4 years ago by cathytian20110
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Citations for TRIGGER
... Hello I have recently came across the package TRIGGER--this R package provides tools for the statistical analysis of integrative genomic data. Its functionality will be useful for my current project. I have not been able to find any publications validating or using this package. If anyone is aware ...
written 6.8 years ago by Mirza, Nasir40 • updated 4.6 years ago by Storey, John D.60

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Popular Question 6.4 years ago, created a question with more than 1,000 views. For Adjusting microarray data using ComBat and SVA

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