User: Kaj Chokeshaiusaha

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Posts by Kaj Chokeshaiusaha

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Problem when trying to use \'affy\' package
... Thank you very much, James!! I will try my best to figure this out. It's always great for naive person like me to have generous person like you in Bioconductors :) Best Regards, Kaj On Thu, Jan 30, 2014 at 9:31 PM, James W. MacDonald wrote: > Hi Kaj, > > If you are really interested i ...
normalization go affy sva scan.upc written 5.1 years ago by Kaj Chokeshaiusaha140
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Comment: C: Problem when trying to use \'affy\' package
... On 28/01/14 00:22, James W. MacDonald wrote: > Hi Kaj, > > I don't see anything obviously wrong with your script. > > I do wonder why you are bothering with loess normalization. Maybe 10 > years ago, normalization of Affy arrays was a relatively hot topic, > but people have sinc ...
written 5.1 years ago by Kaj Chokeshaiusaha140
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Comment: C: Problem when trying to use \'affy\' package
... On 22/01/14 01:24, James W. MacDonald wrote: > Hi Kaj, > > On Sunday, January 19, 2014 8:45:36 AM, Kaj Chokeshaiusaha [guest] wrote: >> >> Dear R helpers, >> >> I have been learning 'affy' package and currently trying 'expresso' >> function of which allows back ...
written 5.1 years ago by Kaj Chokeshaiusaha140
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Comment: C: Creating Annotation package for GPL10427
... Thank you very much. Best regards, Kaj On Fri, Oct 4, 2013 at 8:03 PM, James W. MacDonald wrote: > Hi Kaj, > > Please don't take conversations off-list (e.g., use reply-all when > responding). > > By org package, I mean something similar to the org.Hs.eg.db package, only > ...
written 5.5 years ago by Kaj Chokeshaiusaha140
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Answer: A: Can\'t read canine CEL file with ReadAffy()
... Dear James, Thank you very much. I will try what you suggest. Best regards, Kaj -----Original Message----- From: "James W. MacDonald" Sent: ‎19/‎3/‎2013 3:07 To: "Kaj Chokeshaiusaha [guest]" Cc: "bioconductor@r-project.org" ; "kajkajkajkajkaj@gmail.com" ; "affy Maintainer" Subject: Re: [BioC] ...
written 6.0 years ago by Kaj Chokeshaiusaha140
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Comment: C: Have troubles with finding Annotations for Bovine and Rhesus\' platforms
... Dear Andreas, I can have a package now!!! Great thanks, I'm very in dept to you and everyone helping me. I promise to learn my best. Please enlight me a little bit more. I do want to learn from you. 1. In the code, 'biocLite("org.Bt.eg.db")' is used two times - before and after ' library("bo ...
written 6.1 years ago by Kaj Chokeshaiusaha140
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Comment: C: Have troubles with finding Annotations for Bovine and Rhesus\' platforms
... Dear Jim, Following your advice, my R do calculate something!! These are the script. library(AnnotationForge) setwd("D:/Progect for MOU/Detailed Projects/Cumulus cell/Cow GPL9712") bov_9712<-read.table("A-GEOD-9712.adf.txt", skip=13, sep = "\t", header = FALSE, as.is = TRUE ...
written 6.1 years ago by Kaj Chokeshaiusaha140
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Answer: A: How to make a db package for Agilent-015354 Bovine Oligo Microarray (4x44K)?
... Dear all, I've tried the script as following.. library(AnnotationForge) bov_9712<-read.table("A-GEOD-9712.adf.txt", skip=13, sep = "\t", header = FALSE, as.is = TRUE, fill=T)[,c(2,5)] #Here at this step bov_9712 contained with 2 column data : Spot_ID and Genebank# output="D:/Progect for MOU/ ...
written 6.1 years ago by Kaj Chokeshaiusaha140
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Comment: C: Have troubles with finding Annotations for Bovine and Rhesus\' platforms
... Dear all, I've tried the script as following.. library(AnnotationForge) #Please see the attached "A-GEOD-9712.adf.txt # bov<-read.table("A-GEOD-9712.adf.txt", skip=13, sep = "\t", header = FALSE, as.is = TRUE, fill=T)[,c(2,5)] output="D:/Progect for MOU/Detailed Projects/Cumulus cell/Cow GPL ...
written 6.1 years ago by Kaj Chokeshaiusaha140
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Comment: C: Have troubles with finding Annotations for Bovine and Rhesus\' platforms
... Dear all, Thanks for your admonishment. I will try better. The adf file here is the details of the bovine Agilent platform I'm trying to create annotation. It's just because my weak R, I can't read it in table. Now I can read it by adding 'fill=TRUE' in the command. After reading your advice, In ...
written 6.1 years ago by Kaj Chokeshaiusaha140

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