User: Matthias Zilbauer

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Last seen:
6 years, 5 months ago
Joined:
6 years, 6 months ago
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m****@medschl.cam.ac.uk

Posts by Matthias Zilbauer

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Bumphunter and minfi
... Dear all, I am using the minfi package to pre-process my K450 methylation data as well as to test for differentially methylated probes/positions (dmps). However, I would also like to identify differentially methylated regions (dmrs) and have tried the MethyAnalysis package for this. Does anyone kno ...
genoset minfi bumphunter written 6.5 years ago by Matthias Zilbauer30
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Answer: A: Bumphunter and minfi
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written 6.5 years ago by Matthias Zilbauer30
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Pre-processing and probe removal in lumi
... Dear all, I am working on some Illumina K450 methylation array data using mainly the lumi package. As part of the pre-processing I would like to remove all probes within known SNPs and probes with ambiguous alignments. Unfortunately there is no pre-set function provided and I can't get it to work my ...
lumi written 6.5 years ago by Matthias Zilbauer30 • updated 6.5 years ago by Lavinia Gordon480

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