User: Chris Cabanski

Reputation:
30
Status:
New User
Location:
Last seen:
3 years, 10 months ago
Joined:
4 years, 8 months ago
Email:
c*******@genome.wustl.edu

Posts by Chris Cabanski

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answers
500
views
1
answers
Answer: A: makeTranscriptDbFromUCSC() error
... You can disregard my previous message. makeTranscriptDbFromUCSC() is working correctly again. -Chris > Hi, > I am encountering an error when running makeTranscriptDbFromUCSC() that > was not occurring yesterday. I have tried on 2 separate computers/R > versions and get similar errors ...
written 3.9 years ago by Chris Cabanski30
0
votes
1
answer
500
views
1
answer
makeTranscriptDbFromUCSC() error
... Hi, I am encountering an error when running makeTranscriptDbFromUCSC() that was not occurring yesterday. I have tried on 2 separate computers/R versions and get similar errors. Playing around, it seems like the function works for other genomes but not for hg19, which is what I am looking for. Any ...
genomes written 3.9 years ago by Chris Cabanski30
0
votes
0
answers
713
views
0
answers
pileup coverage from BAM file
... Hi, I have a bam file and I am trying to calculate the coverage at each exon position (base) within a gene. First, I find the exon boundaries for the gene of interest: library(org.Hs.eg.db) library(TxDb.Hsapiens.UCSC.hg19.knownGene) genesym <- c("CDKN2A") geneid <- select(org.Hs.eg.db, key ...
coverage written 4.7 years ago by Chris Cabanski30

Latest awards to Chris Cabanski

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 282 users visited in the last hour