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Answer: Answer: rlog transformation
1 hour ago Michael Love 41k
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26
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Answer: Answer: ONT long-read RNA sequencing - data analysis options
1 hour ago Michael Love 41k
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38
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Answer: Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
1 hour ago Michael Love 41k
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55
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Answer: Answer: covariate with negative and positive values
1 hour ago Michael Love 41k
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626
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Comment: Comment: DESeq2 setting significant p-value
3 hours ago Michael Love 41k
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550
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Comment: Comment: How to correct for known and surrogate variables in DESeq2?
1 day ago Michael Love 41k
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133
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Comment: Comment: Interaction Terms in DESeq2 - Shrinkage
2 days ago Michael Love 41k
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155
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Answer: Answer: How to retrieve detailed regression results from deseq2
3 days ago Michael Love 41k
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163
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Answer: Answer: DEG with low counts
3 days ago Michael Love 41k
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1.5k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
5 days ago Michael Love 41k
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177
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Comment: Comment: Interaction term vs grouping variable design considerations
8 days ago Michael Love 41k
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177
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Answer: Answer: Interaction term vs grouping variable design considerations
8 days ago Michael Love 41k
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126
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Answer: Answer: IgG control in RIP-seq with Deseq2
8 days ago Michael Love 41k
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211
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Answer: Answer: Regressing out batch effects
8 days ago Michael Love 41k
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391
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Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
14 days ago Michael Love 41k
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2.1k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
14 days ago Michael Love 41k
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2.1k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
14 days ago Michael Love 41k
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2.1k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
14 days ago Michael Love 41k
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1
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391
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Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
14 days ago Michael Love 41k
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210
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Comment: Comment: Abnormal Low Dispersion Gene Population in DESeq2
15 days ago Michael Love 41k
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126
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Answer: Answer: DESeq2 , filter and theta arguments in resutlts()
15 days ago Michael Love 41k
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210
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Answer: Answer: Abnormal Low Dispersion Gene Population in DESeq2
16 days ago Michael Love 41k
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146
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Answer: Answer: Convert transcriptomic bam to genomic bam?
17 days ago Michael Love 41k
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301
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
20 days ago Michael Love 41k
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131
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Answer: Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
20 days ago Michael Love 41k
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1
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301
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Answer: Answer: Doing comparison of RNA-seq data using Deseq2
20 days ago Michael Love 41k
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0
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309
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Answer: Answer: PCA of different bacterial species
22 days ago Michael Love 41k
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182
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Comment: Comment: Clarification on Library Size Normalization After Using tximport with countsFrom
23 days ago Michael Love 41k
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182
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Answer: Answer: Clarification on Library Size Normalization After Using tximport with countsFrom
23 days ago Michael Love 41k
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146
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Answer: Answer: collapseReplicates dimension error
23 days ago Michael Love 41k
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1
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195
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Answer: Answer: DESeq2 "Contrast" option
27 days ago Michael Love 41k
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0
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269
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Comment: Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
28 days ago Michael Love 41k
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195
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Answer: Answer: Filtering and Reference Level for DESeq2
28 days ago Michael Love 41k
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1
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269
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Answer: Answer: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
29 days ago Michael Love 41k
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224
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Answer: Answer: Help with Complex DESeq2 Design
29 days ago Michael Love 41k
1
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0
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661
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Comment: Comment: DESeq2 unable to handle large count values
29 days ago Michael Love 41k
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155
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Answer: Answer: Need help with creating and plotting temporal clustering analysis of DEGs
4 weeks ago Michael Love 41k
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127
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Answer: Answer: Help with DESeqDataSetFromHTSeqCount
4 weeks ago Michael Love 41k
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158
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Answer: Answer: lfcShrink error: the line search routine failed
4 weeks ago Michael Love 41k
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243
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Answer: Answer: RNAseq analysis
4 weeks ago Michael Love 41k
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197
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Answer: Answer: With DESeq2 "Not full rank" Error with design
4 weeks ago Michael Love 41k
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397
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Comment: Comment: DESeq2: subtract effect of an isotope control before comparing to a baseline sam
4 weeks ago Michael Love 41k
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292
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Answer: Answer: Missing Band on Volcano Plot from DESeq2
5 weeks ago Michael Love 41k
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1
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397
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Answer: Answer: DESeq2: subtract effect of an isotope control before comparing to a baseline sam
5 weeks ago Michael Love 41k
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395
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Comment: Comment: DESeq2 filtering vs edgeR filtering
5 weeks ago Michael Love 41k
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0
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395
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Answer: Answer: DESeq2 filtering vs edgeR filtering
5 weeks ago Michael Love 41k
1
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1
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1.1k
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Comment: Comment: Adding cell population estimates as a covariate in DESeq2 differential gene expr
5 weeks ago Michael Love 41k
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350
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Answer: Answer: Cross-species analysis - how to compute the mid parent value?
5 weeks ago Michael Love 41k
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1
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311
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Answer: Answer: DESeq2: Comparing A Knockout to a Strain
5 weeks ago Michael Love 41k
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0
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363
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Comment: Comment: DESeq and SVA for batch effect
6 weeks ago Michael Love 41k
7,901 results • Page 1 of 159
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