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163
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Answer: Answer: lfcShrink error: the line search routine failed
5 weeks ago Michael Love 41k
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254
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Answer: Answer: RNAseq analysis
5 weeks ago Michael Love 41k
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206
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Answer: Answer: With DESeq2 "Not full rank" Error with design
5 weeks ago Michael Love 41k
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405
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Comment: Comment: DESeq2: subtract effect of an isotope control before comparing to a baseline sam
5 weeks ago Michael Love 41k
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298
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Answer: Answer: Missing Band on Volcano Plot from DESeq2
5 weeks ago Michael Love 41k
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1
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405
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Answer: Answer: DESeq2: subtract effect of an isotope control before comparing to a baseline sam
5 weeks ago Michael Love 41k
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406
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Comment: Comment: DESeq2 filtering vs edgeR filtering
5 weeks ago Michael Love 41k
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406
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Answer: Answer: DESeq2 filtering vs edgeR filtering
6 weeks ago Michael Love 41k
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Comment: Comment: Adding cell population estimates as a covariate in DESeq2 differential gene expr
6 weeks ago Michael Love 41k
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358
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Answer: Answer: Cross-species analysis - how to compute the mid parent value?
6 weeks ago Michael Love 41k
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1
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320
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Answer: Answer: DESeq2: Comparing A Knockout to a Strain
6 weeks ago Michael Love 41k
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373
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Comment: Comment: DESeq and SVA for batch effect
6 weeks ago Michael Love 41k
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255
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Answer: Answer: DEseq2 dispersion plot
7 weeks ago Michael Love 41k
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307
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Answer: Answer: Dispersion estimation step is very slow with latest DESeq2 and glmGamPoi
7 weeks ago Michael Love 41k
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597
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Comment: Comment: DESEQ Inquiry
7 weeks ago Michael Love 41k
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654
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
7 weeks ago Michael Love 41k
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177
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Answer: Answer: few significant genes from DESeq2 analysis
8 weeks ago Michael Love 41k
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1
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654
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
8 weeks ago Michael Love 41k
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1
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1.0k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
8 weeks ago Michael Love 41k
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1
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654
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
8 weeks ago Michael Love 41k
1
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1
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597
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Comment: Comment: DESEQ Inquiry
8 weeks ago Michael Love 41k
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1
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654
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
8 weeks ago Michael Love 41k
0
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1
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1.0k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
8 weeks ago Michael Love 41k
0
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1
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1.0k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
8 weeks ago Michael Love 41k
1
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2
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367
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Answer: Answer: DEseq2 coefficient
8 weeks ago Michael Love 41k
1
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1
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597
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Answer: Answer: DESEQ Inquiry
8 weeks ago Michael Love 41k
1
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0
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243
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Answer: Answer: Limma Question
8 weeks ago Michael Love 41k
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1
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654
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
8 weeks ago Michael Love 41k
0
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0
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327
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Comment: Comment: library sizes differ extremely after dds
8 weeks ago Michael Love 41k
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1
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295
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Answer: Answer: evaluate the variable importance on genes
8 weeks ago Michael Love 41k
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1
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327
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Answer: Answer: library sizes differ extremely after dds
8 weeks ago Michael Love 41k
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1
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1.0k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
8 weeks ago Michael Love 41k
0
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1
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654
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
8 weeks ago Michael Love 41k
0
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1
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654
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Answer: Answer: Unexpected behavior of lfcShrink() function in DESeq2 analysis
8 weeks ago Michael Love 41k
0
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0
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26k
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Comment: Comment: DESEq2 Paired samples Before and after treatment
8 weeks ago Michael Love 41k
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0
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1.3k
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Comment: Comment: Normalizing Salmon output count data matrix using DESeq2
8 weeks ago Michael Love 41k
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0
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303
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Comment: Comment: utf-8 codec can't decode byte 0xd5
8 weeks ago Michael Love 41k
1
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1
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338
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Comment: Comment: vst transformation and zero counts
8 weeks ago Michael Love 41k
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1
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338
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Answer: Answer: vst transformation and zero counts
8 weeks ago Michael Love 41k
0
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1
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1.0k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
8 weeks ago Michael Love 41k
0
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1
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1.0k
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Answer: Answer: How to calculate p value when comparing two sets of DEGs and not applying intera
8 weeks ago Michael Love 41k
0
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1
reply
1.3k
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Comment: Comment: Normalizing Salmon output count data matrix using DESeq2
8 weeks ago Michael Love 41k
0
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1
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2.7k
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Comment: Comment: DESeq2::sizeFactors() function does not output the sizeFactor table.
8 weeks ago Michael Love 41k
0
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1
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303
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Answer: Answer: utf-8 codec can't decode byte 0xd5
9 weeks ago Michael Love 41k
0
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0
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373
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Comment: Comment: DESeq2: Adjust for treatment effect patient vs control
9 weeks ago Michael Love 41k
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0
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409
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Comment: Comment: DESEQ2 Repeated Measures-like design error help
9 weeks ago Michael Love 41k
0
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1
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373
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Answer: Answer: DESeq2: Adjust for treatment effect patient vs control
9 weeks ago Michael Love 41k
0
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0
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354
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Answer: Answer: Pseudobulk-DESeq2 analyze multiple cell types at once?
9 weeks ago Michael Love 41k
0
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1
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383
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Answer: Answer: DESeq filtering specific to contrasts
9 weeks ago Michael Love 41k
0
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1
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425
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Answer: Answer: help checking the design matrix and contrast in DESeq2 "not full rank" scenario
9 weeks ago Michael Love 41k
7,913 results • Page 2 of 159
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