User: abdul rawoof

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abdul rawoof60
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9 months, 3 weeks ago
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6 years, 6 months ago
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Posts by abdul rawoof

<prev • 9 results • page 1 of 1 • next >
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ASpli AsDiscover error
... Hello everyone, I am performing alternative splicing analysis in my transcriptome samples using ASpli R package. However, while performing analysis using function AsDiscover I got following error ####################### >AsDiscover(counts = counts, targets = targets, features = features, bam = b ...
R alternative splicing aspli asdiscover written 10 months ago by abdul rawoof60
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Comment: C: OmicCircos mapping data file.
... Thanks, It's really helpful for me...I also thought in the same way but I was using hg19 built thats why I was not getting correct position value. ...
written 5.0 years ago by abdul rawoof60
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OmicCircos mapping data file.
... Hi all,   Could anyone can help me to create mapping data file format used in OmicCircos. I want to make "mapping data file" for my expression data. I have a set of genes for which I got chromosome start and chromosome end position. As mentioned in OmicCircos the mapping data file have chromosome p ...
omiccircos written 5.0 years ago by abdul rawoof60 • updated 4.6 years ago by Hu, Ying NIH/NCI [E]50
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Comment: C: Regarding extraction of 3' and 5'UTRs and exonic region of a gene.
... Thanks for your kind suggestion and I will try to follow your suggested workflow and obviously it will take time to learn all this packages as I never go through it. One more thing I want to ask that how can I download the list of all available cancer genes for human from Kegg database for wnt sig ...
written 6.3 years ago by abdul rawoof60
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Regarding extraction of 3' and 5'UTRs and exonic region of a gene.
... Hello everyone, Could anyone show me the way how can I extract the *3' and 5' UTRs and exonic regions *of all *Human genes* from *Ensembl and Kegg database* that are involved in particular cancer specially *breast cancer *using R/Biocondutor. Thanks in advance. Abdul Rawoof [[alternativ ...
cancer written 6.3 years ago by abdul rawoof60 • updated 6.3 years ago by Hervé Pagès ♦♦ 14k
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(no subject)
... Hello, I want to do an intergrated network analysis for my Differential Expressed genes. So could anyone tell me how can I do. Which package should I use. Thanks, Abdul Rawoof [[alternative HTML version deleted]] ...
network written 6.5 years ago by abdul rawoof60 • updated 6.4 years ago by Gordon Smyth39k
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Differences between lmfit model(from limma package) and Illumina-custom Model(from GenomeStudio).
... Hello everybody, I am doing WG-DASL data analysis using GenomeStudio and R/Bioconductor. Could anyone please able to tell me the major differences in both model that affect the result. If any documentation available please tell me. Thanks, Abdul Rawoof [[alternative HTML version deleted]] ...
written 6.5 years ago by abdul rawoof60
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(no subject)
... Hello everyone, I am doing beadsummary data analysis for illumina's WG-DASL data. I am using beadarray package for analysis. Could anybody tell me why I am not getting "QC Information" for my data as I am also importing qcFile. Here is following script:: *************************************** ...
written 6.5 years ago by abdul rawoof60
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Regarding Illumina's WG-DASL.
... Hello, I am doing Differential Gene Expression analysis for illumina's WG- DASL data using R Bioconductor and GenomeStudio. I am using Quantile normalisation and BH-FDR on both platform for finding DEgenes. But the result is not comparable from both platform. Please find the attached file for R Scr ...
written 6.6 years ago by abdul rawoof60

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Popular Question 5.0 years ago, created a question with more than 1,000 views. For Regarding extraction of 3' and 5'UTRs and exonic region of a gene.

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