User: Robert Ivanek

gravatar for Robert Ivanek
Robert Ivanek350
Reputation:
350
Status:
Trusted
Location:
Switzerland
Last seen:
1 day, 8 hours ago
Joined:
4 years, 7 months ago
Email:
r************@unibas.ch

Posts by Robert Ivanek

<prev • 51 results • page 2 of 6 • next >
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Answer: A: Gviz Sashimi Plot height/colour/count
... Hi Stefan, I am sorry for the delay. 1) Currently it is possible to adjust the height of "coverage" (or "sashimi") track only if also "pileup" is displayed. Otherwise each of them occupies half of the track height. 2) There was typo in the code. Thank you for pointing it out. "col.sashimi" should ...
written 14 months ago by Robert Ivanek350
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Job: PostDoc Position in Computational Biology of Gene Regulatory Networks and Epigenetics, University of Basel, Switzerland
... Postdoctoral Position in Computational Biology of Gene Regulatory Networks and Epigenetics 100% (available immediately, up to 5 years) This position is part of a 5-year ERC funded research project aiming to get fundamental insights into how signalling inputs orchestrate changes in chromatin and tr ...
job bioinformatician job postdoc switzerland written 15 months ago by Robert Ivanek350
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Job: Bioinformatician 80-100%, Core Facility at the DBM, University of Basel, Switzerland
... Bioinformatician 80-100% The Department of Biomedicine (DBM) at the University of Basel and University Hospital Basel is seeking a Ph.D. level bioinformatician to join the Bioinformatics Core Facility. The position is initially limited to two years with a possibility for permanent extension. The Bi ...
job bioinformatician job core facility written 16 months ago by Robert Ivanek350
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Comment: C: Gviz AlignmentTrack problem
... I believe this might do the trick: levels(itrack@bandTable$chrom) <- sub("^chr", "", levels(itrack@bandTable$chrom)) ...
written 18 months ago by Robert Ivanek350
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Answer: A: Gviz AlignmentTrack problem
... Hi, This is because by default Gviz requires chromosome names in UCSC format, i.e. chr7. However you can force the Gviz to accept also other chromosome names by setting ucscChromosomeNames to FALSE: options(ucscChromosomeNames=FALSE) You need to run this before creating the AlignmentTrack objec ...
written 18 months ago by Robert Ivanek350
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Comment: C: Is there a way to align Hi-C half heatmaps to Gviz track?
... Hi Nicolas,  Have you tried the plotting type "heatmap" for DataTrack ? Just for curiosity could you post a figure which you made manually and would like to create it in Gviz? Best Robert ...
written 19 months ago by Robert Ivanek350
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Answer: A: Givz sashimi plot controlling the height of plots.
... Dear Rob, thanks for reporting this bug, I fixed the plot layout in both devel and release version (1.14.6, 1.15.6) ...
written 19 months ago by Robert Ivanek350
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Comment: C: Givz sashimi plot controlling the height of plots.
... Can you please provide reproducible example of your code and your sessionInfo? ...
written 19 months ago by Robert Ivanek350
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Answer: A: Gviz Sashimi Plots
... Thanks Eduardo for reporting this bug. I have just uploaded fixed code to the SVN (release 1.14.5,  devel 1.15.5). ...
written 20 months ago by Robert Ivanek350
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Answer: A: Gviz Sashimi Plots
... Could you share with me the BAM file (or rather its subset with the region of interest)? Robert ...
written 20 months ago by Robert Ivanek350

Latest awards to Robert Ivanek

Scholar 19 months ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 19 months ago, created an answer that has been accepted. For A: Gviz GeneRegionTrack draw only one gene in the range
Scholar 19 months ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 21 months ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 21 months ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 22 months ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 2.1 years ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 2.6 years ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"

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