User: Kevin Ushey

gravatar for Kevin Ushey
Kevin Ushey10
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10
Status:
New User
Location:
United States
Last seen:
5 months, 1 week ago
Joined:
6 years, 1 month ago
Email:
k*********@gmail.com

Posts by Kevin Ushey

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
... FWIW, in Packrat's case, BiocInstaller already was in Enhances. My current plan is to just hide the dependency from CRAN altogether and implicitly call requireNamespace() and asNamespace() behind the scenes to load the package opportunistically when available. This isn't great, but I don't see a bet ...
written 7 months ago by Kevin Ushey10
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Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
... Hi, I recently received the following e-mail from Professor Ripley: --- DELETED -- PLEASE DO NOT POST PRIVATE EMAIL WITHOUT PERMISSION --- However, I'd much prefer to have the current version of my package available for older versions of R, while using BiocInstaller / BiocManager as needed (and ...
biocinstaller cran biocmanager written 7 months ago by Kevin Ushey10 • updated 7 months ago by Martin Morgan ♦♦ 23k
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Comment: C: BiocInstaller fails to load with older R within a 'suppressMessages()' context
... Hi Martin, Thanks for the response -- it looks like the current development version of BiocInstaller should indeed resolve this particular issue. For reference, RStudio attempts to force the use of https on startup by taking over the 'download.file.method' and 'download.file.extra' options. The lo ...
written 2.6 years ago by Kevin Ushey10
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Comment: C: BiocInstaller fails to load with older R within a 'suppressMessages()' context
... I believe https://support.bioconductor.org/p/84173/ is related (although a reproducible example was not discovered there). ...
written 2.6 years ago by Kevin Ushey10
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BiocInstaller fails to load with older R within a 'suppressMessages()' context
... To reproduce, try running the following code on a version with R without libcurl support (e.g. the Snow Leopard build of R 3.2.1): > suppressMessages(library(BiocInstaller)) Error : .onLoad failed in loadNamespace() for 'BiocInstaller', details: call: url(paste0(.protocol(), "//bioconductor.o ...
biocinstaller written 2.6 years ago by Kevin Ushey10 • updated 2.6 years ago by Martin Morgan ♦♦ 23k
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Answer: A: Request: Annotate DESCRIPTION of 'extra' packages with 'biocViews' or other iden
... Thanks Dan -- that will definitely suffice for us. Much appreciated! ...
written 4.1 years ago by Kevin Ushey10
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Request: Annotate DESCRIPTION of 'extra' packages with 'biocViews' or other identifying tag
... Bioconductor hosts a couple of 'extra' packages, with the current set of 'release' packages annotated here:     http://bioconductor.org/packages/release/extra/ It is rather nice that Bioconductor mirrors a subset of packages from external repositories. However, it appears to me that there is no co ...
bioconductor extra-packages written 4.1 years ago by Kevin Ushey10
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Problems with SVGAnnotation package
... Hi, I'm having trouble using the SVGAnnotation package with R 3.0.0. In particular, I'm unable to run any of the examples available at http://www.omegahat.org/SVGAnnotation/tests/examples.html ; these all worked AFAIK with R prior to 3.0.0. Here's some example output from trying to run the first ex ...
written 6.1 years ago by Kevin Ushey10 • updated 6.1 years ago by Dan Tenenbaum8.2k

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