User: Mark Dane

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Mark Dane40
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40
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6 years, 4 months ago
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6 years, 4 months ago
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m*********@gmail.com

Posts by Mark Dane

<prev • 4 results • page 1 of 1 • next >
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cellHTS Repeat Values in Text Output
... Hi, I am seeing a problem with the text output in my multi-channel experiment. I have different types of data so I want to normalize and score the channels separately. Therefore, I do not want to run summarizeReplicates. I think the following will show what I am doing: x <- readPlateList("Plate ...
written 6.3 years ago by Mark Dane40 • updated 6.3 years ago by Joseph Barry160
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cellHTS2 PlateList order problem
... Hi, I believe there is an error in readPlateList. I can reproduce it in the KcViab data set by changing the order the files are listed. For instance, moving the last file in Platelist.txt up to the first position like this: Filename Plate Replicate FT57-G02.txt 57 2 FT01-G01.txt ...
multichannel written 6.3 years ago by Mark Dane40 • updated 6.3 years ago by Wolfgang Huber13k
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Problem with cellHTS2 convertWellCoordinates
... Hi, I'm getting the following inconsistent results from cellHTS2 convertWellCoordinates. pd <- c("nrow"=108L, "ncol"=36L) convertWellCoordinates(c(1, 1500), pd) correctly returns: $letnum [1] "A01" "AP24" $let.num letters [1,] "A" "01" [2,] "AP" "24" $num [1] 1 1500 conver ...
written 6.4 years ago by Mark Dane40 • updated 6.4 years ago by Joseph Barry160
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cellHTS2 and channelNames
... Hi, I'm using cellHTS2 for a large siRNA screening project and want to rename the channels. The cellHTS instance I created has the default names: > channelNames(x) [1] "Channel 1" "Channel 2" "Channel 3" "Channel 4" "Channel 5" "Channel 6" [7] "Channel 7" "Channel 8" The documentation in versi ...
cellhts cellhts2 written 6.4 years ago by Mark Dane40 • updated 6.4 years ago by Wolfgang Huber13k

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