User: suzy.stiegelmeyer@syngenta.com

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United States
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4 years, 2 months ago
Joined:
6 years ago
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s****************@syngenta.com

Posts by suzy.stiegelmeyer@syngenta.com

<prev • 5 results • page 1 of 1 • next >
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Error when running goseq (error in makespline)
... Hi, I am getting the following error when running nullp Error in if (min(fv) < lower_bound) fv = fv - min(fv) + lower_bound :    missing value where TRUE/FALSE needed I've traced the problem to makespline.R line 53.  pcls(G) is return NaNs.  FYI, line 17 (if(hi<=low) {) is true so the refle ...
software error written 4.2 years ago by suzy.stiegelmeyer@syngenta.com40 • updated 4.2 years ago by Gordon Smyth37k
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Comment: C: Error in getAmigoTree (RamiGO package)
... Hi again, I think I have found a work around by editing the source code. In the file getAmigoTree.R, change the following: Change line 1 from getAmigoTree <- function(goIDs, color, pvalues, pcolors = c("white","tomato"), psplit = c(1,0.25,0.1,0.05,0.001), filename, picType = "png", modeType = " ...
written 5.2 years ago by suzy.stiegelmeyer@syngenta.com40
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Error in getAmigoTree (RamiGO package)
... Hi everyone, I'm having some trouble with the RamiGO package. I'm getting an error when executing getAmigoTree. Can anyone recommend a workaround? Maybe the server is having a bad day but it is hard to tell. Here is a log of what is happening: > ids=c("GO:0009058","GO:0015995") > pngamigo= ...
ramigo written 5.2 years ago by suzy.stiegelmeyer@syngenta.com40 • updated 5.2 years ago by Dan Tenenbaum8.2k
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rBiopaxParser error
... Hi, Does anyone know a workaround for the following error I'm getting using the rBiopaxParser package? In case you want to try it yourself, download the ricecyc file from here: ftp://ftp.gramene.org/pub/gramene/pathways/ricecyc/v_3_3/ Thanks in advance for your help, Suzy R session: > ricecyc= ...
rbiopaxparser written 6.0 years ago by suzy.stiegelmeyer@syngenta.com40 • updated 6.0 years ago by Dan Tenenbaum8.2k
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problem with aveLogCPM.default in edgeR
... Hi, I recently upgraded edgeR from 3.0.8 to 3.2.3 and I'm noticing some differences. I have some data that I normalized with EDASeq. I attempted to calculate the trended dispersion and I get the following error: > dglmtrend=estimateGLMTrendedDisp(exprs(dataNormgcOff),design,offset= -offst(data ...
edger edaseq written 6.0 years ago by suzy.stiegelmeyer@syngenta.com40 • updated 6.0 years ago by Gordon Smyth37k

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