User: Pengcheng Yang

Reputation:
50
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Trusted
Location:
China
Website:
https://scholar.google...
Scholar ID:
Google Scholar Page
Last seen:
8 months, 4 weeks ago
Joined:
6 years, 4 months ago
Email:
p******@gmail.com

Posts by Pengcheng Yang

<prev • 33 results • page 3 of 4 • next >
4
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1
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215
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no import.bam function in CAGEr version 1.22.3
... Hi, I found there is no import.bam function in the latest version (1.22.3) of CAGEr. However, the import.bam function has been documented in the reference manual of CAGEr (http://www.bioconductor.org/packages/release/bioc/manuals/CAGEr/man/CAGEr.pdf)     > library(CAGEr) > sessionInfo() R ...
cager written 13 months ago by Pengcheng Yang50
0
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1
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648
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1
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Comment: C: Fail to load "MotifDb" package
... Hi Paul Shanno, Thank you for your reply and the provided information. I have tried the solution and successfully loaded the MotifDb library under R 3.3.2 version. Pengcheng ...
written 2.7 years ago by Pengcheng Yang50
0
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1
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648
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1
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Comment: C: Fail to load "MotifDb" package
... The following solution come from: The reply from Herve Pages You'll actually have to reinstall from source i.e. with: biocLite(c("BiocGenerics", "S4Vectors", "IRanges", "GenomicRanges"), type="source") which won't work if your system is not set up for doing this. Our Windows and Mac bin ...
written 2.7 years ago by Pengcheng Yang50
0
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2
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5.7k
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2
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Comment: C: Error in GRanges: could not find symbol "recursive" in environment of the generi
... Hi Herve Pages, I cann't reinstall these packages from source on my Win7 system. As you have suggested, I will switch to the R 3.3.2 version. Thank you. Error : .onLoad failed in loadNamespace() for 'MotifDb', details: call: c(values, x) error: could not find symbol "recursive" in environment ...
written 2.7 years ago by Pengcheng Yang50
0
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2
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1.5k
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2
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Comment: C: getGEO function not identifying local file
... In my case, the getGEO(filename="GSE11724.soft") give the following error Error in readLines(con, lineCounts[1, 1] - 1) : invalid 'n' argument ...
written 2.7 years ago by Pengcheng Yang50
3
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1
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648
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Fail to load "MotifDb" package
... Hi all, I have successfully installed "MotifDb" package,but failed to load it, and got the following error message. After a while searching, It may be caused by some R package that not updated to the newest version. However, I have upgraded all the packages. Thank you! ===================== > ...
motifdb library load written 2.7 years ago by Pengcheng Yang50 • updated 2.7 years ago by Paul Shannon370
0
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0
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700
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0
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Comment: C: Error in intI when plotting igraph graph.
... Is there solution for this thread? I have encountered exactly the same problem. ...
written 2.8 years ago by Pengcheng Yang50
0
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0
answers
386
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0
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parameters in build.mim in minet package
... Hi,  Using minet package to construct GRN, the first step is to build the mutual information matrix using build.mim function. However, sparse documentation on the influence of the alternative methods used to the final constructed network. The parameter including "estimator" and "discretization". I ...
minet build.mim written 2.9 years ago by Pengcheng Yang50
0
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2
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1.3k
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2
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Comment: C: Package qvalue - can it be installed without TCL-TK support?
... As John suggested, the solution is: downloaded the package from: http://www.bioconductor.org/packages/release/bioc/src/contrib/qvalue_1 .38.0.tar.gz untar and modify the file qvalue/NAMESPACE: delete the following lines: importFrom(tcltk, tclvalue, "tclvalue<-", tclVar, tkbutton, ...
written 5.5 years ago by Pengcheng Yang50
0
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1
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2.4k
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Comment: C: ERROR: compilation failed for package XVector
... Hi Herve, Originally, I wanted to install spliceR, which depends on GenomicRanges, then which depends on XVector. I have installed other depended packages successfully by local methods. But not XVector. Thanks Herve, I have installed XVector now, but haven't tested it. Best, Pengcheng On 2013/7/2 ...
written 6.3 years ago by Pengcheng Yang50

Latest awards to Pengcheng Yang

Scholar 17 months ago, created an answer that has been accepted. For A: no import.bam function in CAGEr version 1.22.3
Scholar 17 months ago, created an answer that has been accepted. For A: bam2CTSS function error from CAGEr package
Supporter 2.7 years ago, voted at least 25 times.
Popular Question 5.5 years ago, created a question with more than 1,000 views. For ERROR: compilation failed for package XVector

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