User: Yang Liao
- Last seen:
- 5 days, 21 hours ago
- 5 years, 8 months ago
Posts by Yang Liao
... Hi Ge Tan, I used Rsubread_1.26.1 to assign the lines you provided, and the read groups were correctly treated by featureCounts: x<-featureCounts(c('user-RG.bam','user-RG.sam') , annot.inbuilt = "hg19", byReadGroup = T) NCBI RefSeq annotation for hg19 (build 37.2) is used. //================= ...
Answer: A: Error with featureCounts
... It looks that the current directory has no enough space, or some reads in the SAM file are extremely long (e.g., longer than 1200 bps). ...
... Dear Alan, Thank you for using Rsubread. The number of transcripts in the annotation file would not be an issue -- our featureCounts function supports unlimited number of annotations and chromosomes/transcripts (actually, at most 2 billions). I have just tried to run the in-development version of ...
Latest awards to Yang Liao
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Rsubread install fails, "unable to load shared object Rsubread.so"
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Rsubread install fails, "unable to load shared object Rsubread.so"
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