User: b a

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b a40
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6 years, 1 month ago
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Posts by b a

<prev • 4 results • page 1 of 1 • next >
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QC for HT HGU133A and U133A X3P
... Dear Gregory, ? Thank you for the answer! ? Now I'm not able to use simpleaffy package for these two chips because I need to create qcdef files for arrays. An error occurred when I try to call qc(): ? Error in setQCEnvironment(cdfn) : ? Could not find array defi ...
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy written 6.1 years ago by b a40
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QC for HT HGU133A and U133A X3P
... Dear colleagues, I need some QC tests (scale factor, background level, GADPH, beta- actin and other) for these two chips. ht_hgu133a chip is very similar to the hgu133a chip and I can use hgu133acdf.qcdef file for this analysis (see this: https://stat.ethz.ch/pipermail/bioconductor/2011-October/0 ...
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy written 6.2 years ago by b a40
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Comment: C: XPS package QC data
... Dear Christian, Thank you for this answer. I'm trying to use this package for automatic quality control. In arrayQualityMetrics report I can see table with detected outliers (such as here: http://www- huber.embl.de/arrayQualityMetrics/Report_for_nMLL_with_factors/). In the xps package I cannot make ...
written 6.2 years ago by b a40
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XPS package QC data
... Dear colleagues, I use xps package for my HuGene ST 1.0 array and need some help in quality control. I used arrayQualityMetrics package before new version of R was avaliable which doesn't maintain affy package for ST arrays. ArrayQualityMetrics creates good report with "outliers" assays, which are ...
affy arrayqualitymetrics xps written 6.3 years ago by b a40 • updated 6.3 years ago by cstrato3.9k

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