User: Meritxell Oliva

Reputation:
90
Status:
New User
Location:
Last seen:
6 years, 2 months ago
Joined:
6 years, 2 months ago
Email:
m**********@gmail.com

Posts by Meritxell Oliva

<prev • 4 results • page 1 of 1 • next >
0
votes
0
answers
1.4k
views
0
answers
sva + voom + limma. eBayes(trend=TRUE)
... Hi Gordon, Thanks for your quick answer. I used trend=TRUE 'cause you posted in Bioconductor that it's a good strategy if you are not filtering for genes with low counts, as this strategy is devoted to model a good mean-variance trend for genes on the low expression range. This is the message I ...
go written 6.2 years ago by Meritxell Oliva90
1
vote
1
answer
2.4k
views
1
answers
Comment: C: sva: how to incorporate adjusting variables
... Hi Jeff, First of all, thank you for your quick answer. I still have some doubts, though: I understand that option A) is the most appropriate choice if one wants to explicitly include variables Population and Genotype to the final linear model. However, this is not my ultimate goal, meaning that ...
written 6.2 years ago by Meritxell Oliva90
0
votes
2
answers
3.1k
views
2
answers
sva + voom + limma
... Dear Bioconductor list, Dear Jeff Leek & Gordon Smith, I want to use sva() to estimate potential surrogate variables of a RNASeq derived expression dataset, as a previous step to perform differential gene expression analysis with limma(), previously using voom() to transform RNASeq to microarray ...
rnaseq microarray sva written 6.2 years ago by Meritxell Oliva90 • updated 6.2 years ago by Gordon Smyth39k
8
votes
1
answer
2.4k
views
5 follow
1
answer
sva: how to incorporate adjusting variables
... Dear Bioconductor list & Jeff Leek, I am using sva to estimate potential surrogate variables of a microarray derived expression dataset, as a previous step to perform differential gene expression analysis. The aim of my work is to study how one multifactorial variable ( inversion genotype, thre ...
inversion sva written 6.2 years ago by Meritxell Oliva90 • updated 6.2 years ago by Jeff Leek580

Latest awards to Meritxell Oliva

Popular Question 6.2 years ago, created a question with more than 1,000 views. For sva: how to incorporate adjusting variables
Student 6.2 years ago, asked a question with at least 3 up-votes. For sva: how to incorporate adjusting variables
Popular Question 6.2 years ago, created a question with more than 1,000 views. For sva + voom + limma
Popular Question 6.2 years ago, created a question with more than 1,000 views. For sva + voom + limma

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 477 users visited in the last hour