User: Anitha Sundararajan

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Posts by Anitha Sundararajan

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Comment: C: DiffBind -error with dba.counts
... Sorry, I did try the minOverlap=2 (didnt rectify when I wrote the email, my bad) On 9/16/13 1:59 PM, Anitha Sundararajan wrote: > Hi Gordon > > I am now trying to run both reps for each sample, despite their low > correlation. When I try the > > >B73.H3K4=dba.count(B73.H3K4, ...
written 5.8 years ago by Anitha Sundararajan140
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Comment: C: DiffBind -error with dba.counts
... Hi Gordon I am now trying to run both reps for each sample, despite their low correlation. When I try the >B73.H3K4=dba.count(B73.H3K4, minOverlap=3) the R-session just freezes and there is no response for hours. I am not sure if there is anything wrong with any of my input files. The samp ...
written 5.8 years ago by Anitha Sundararajan140
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DiffBind -error with dba.counts
... Hi I have been trying to use DiffBind to analyze our Chip-seq data and have been running into some errors repeatedly. I first created a samplesheet.csv describing my samples and it looks like this: SampleID,Tissue,Factor,Condition,Replicate,bamReads,bamControl,Peaks,P eakCaller meio.1,meiocytes, ...
diffbind written 5.9 years ago by Anitha Sundararajan140 • updated 5.8 years ago by Gord Brown590
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error with dba.counts
... Hi I have been trying to use DiffBind to analyze our Chip-seq data and have been running into some errors repeatedly. I first created a samplesheet.csv describing my samples and it looks like this: SampleID,Tissue,Factor,Condition,Replicate,bamReads,bamControl,Peaks,P eakCaller meio.1,meiocytes,H ...
diffbind written 5.9 years ago by Anitha Sundararajan140

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