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3
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1
reply
2.9k
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Answer:
A: Dispersion fit and p-value distributions
5.4 years ago
Bernd Klaus
▴ 610
2
votes
1
reply
6.6k
views
Answer:
A: DESeq2 dispersion and p-value histograms
6.4 years ago
Bernd Klaus
▴ 610
2
votes
0
replies
3.1k
views
Answer:
A: DESEq2 p-values weird distribution under the H0 and fdrtool
6.6 years ago
Bernd Klaus
▴ 610
0
votes
0
replies
4.2k
views
Answer:
A: Alternative packages to limma for analysis of microarray datasets
6.9 years ago
Bernd Klaus
▴ 610
0
votes
0
replies
3.1k
views
Answer:
A: Inspection and Correction of p-values in DESeq2 pipeline by Bernd
7.1 years ago
Bernd Klaus
▴ 610
1
vote
1
reply
1.9k
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Answer:
A: How to use 'IHW' package to filter genes?
7.2 years ago
Bernd Klaus
▴ 610
0
votes
0
replies
1.2k
views
Answer:
A: No counts generated when running python counting script.
7.3 years ago
Bernd Klaus
▴ 610
1
vote
0
replies
1.1k
views
Answer:
A: About interaction effect 2
7.4 years ago
Bernd Klaus
▴ 610
2
votes
0
replies
2.5k
views
Answer:
A: DESeq2 interaction term
7.4 years ago
Bernd Klaus
▴ 610
3
votes
0
replies
1.9k
views
Answer:
A: Problem using sva with limma for microarray DE analysis
7.5 years ago
Bernd Klaus
▴ 610
2
votes
1
reply
1.9k
views
Answer:
A: Problem using sva with limma for microarray DE analysis
7.5 years ago
Bernd Klaus
▴ 610
1
vote
1
reply
5.1k
views
Answer:
A: Correcting for known and surrogate variables in DESeq2
7.5 years ago
Bernd Klaus
▴ 610
1
vote
1
reply
1.7k
views
Answer:
A: Paired design, normalisation and batch effects.
7.6 years ago
Bernd Klaus
▴ 610
2
votes
1
reply
1.6k
views
Answer:
A: Trying to account for gene length in topGO analysis
7.7 years ago
Bernd Klaus
▴ 610
1
vote
2
replies
1.6k
views
Answer:
A: Microarray data preprocessing and differentially expressed genes
7.8 years ago
Bernd Klaus
▴ 610
1
vote
0
replies
3.5k
views
Answer:
A: DESeq2 and fdrtool: applying FDR correction when the empirical sigma is greater
7.8 years ago
Bernd Klaus
▴ 610
2
votes
0
replies
2.6k
views
Answer:
A: ribosome profiling and rna seq data with Deseq2 package
8.1 years ago
Bernd Klaus
▴ 610
1
vote
0
replies
13k
views
Answer:
A: Is the following a correct usage of Limma's removeBatchEffect() for clustered he
8.2 years ago
Bernd Klaus
▴ 610
0
votes
1
reply
11k
views
Answer:
A: DESeq2 and ComBat
8.2 years ago
Bernd Klaus
▴ 610
0
votes
1
reply
5.0k
views
Answer:
A: DESEQ2 with 3 biological replicates for control and 1 biological replicate for t
8.3 years ago
Bernd Klaus
▴ 610
3
votes
1
reply
5.9k
views
Answer:
A: DeSeq2 - hill–shaped histogram of pvalues
8.6 years ago
Bernd Klaus
▴ 610
2
votes
1
reply
14k
views
Answer:
A: using duplicateCorrelation with limma+voom for RNA-seq data
updated 8.9 years ago by
Gordon Smyth
50k • written 9.9 years ago by
Bernd Klaus
▴ 610
2
votes
2
replies
2.9k
views
Answer:
A: Help with DESeq2 Multiple Factor Design
9.0 years ago
Bernd Klaus
▴ 610
1
vote
0
replies
21k
views
Answer:
A: Integrating DESeq2 and TopGO for Enrichment
9.1 years ago
Bernd Klaus
▴ 610
0
votes
0
replies
5.1k
views
Answer:
A: topGO: How to create gene2GO annotation for mouse?
9.2 years ago
Bernd Klaus
▴ 610
1
vote
0
replies
1.4k
views
Answer:
A: ComBat (SVA) Application - Two Technical Effects
9.2 years ago
Bernd Klaus
▴ 610
1
vote
1
reply
4.8k
views
Answer:
A: deseq2 - PCA plot
9.3 years ago
Bernd Klaus
▴ 610
2
votes
0
replies
2.7k
views
Answer:
A: topGO: how to visualize gene in GO enriched categories?
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
Bernd Klaus
▴ 610
0
votes
0
replies
2.5k
views
Answer:
A: design matrix in limma
9.5 years ago
Bernd Klaus
▴ 610
0
votes
1
reply
3.2k
views
Answer:
A: converting probeset id to gene id's : fRMA
9.8 years ago
Bernd Klaus
▴ 610
0
votes
0
replies
979
views
Answer:
A: Error using the id function of ShortReadQ object
9.9 years ago
Bernd Klaus
▴ 610
0
votes
1
reply
2.0k
views
Answer:
A: design matrix paired data
9.9 years ago
Bernd Klaus
▴ 610
0
votes
1
reply
5.4k
views
Answer:
A: How to do Affy ST array analysis
9.9 years ago
Bernd Klaus
▴ 610
0
votes
0
replies
4.5k
views
Answer:
A: Questions about GOseq after DESeq2
10.1 years ago
Bernd Klaus
▴ 610
0
votes
1
reply
4.5k
views
Answer:
A: Questions about GOseq after DESeq2
10.1 years ago
Bernd Klaus
▴ 610
0
votes
0
replies
2.3k
views
Answer:
A: Limma makeContrasts - incorporating known confounder
10.3 years ago
Bernd Klaus
▴ 610
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