User: Matthias Lienhard

Reputation:
140
Status:
Trusted
Location:
Max Planck Institute for molecular Genetics, Berlin, Germany
Website:
http://www.molgen.mpg....
Scholar ID:
Google Scholar Page
Last seen:
4 weeks, 1 day ago
Joined:
5 years, 11 months ago
Email:
l*******@molgen.mpg.de

Education

  • 2008: Bachelor of Science in Bioinformatics, FU Berlin (Germany)
  • 2011: Master of Science in Bioinformatics, FU Berlin
  • Since 2012: PhD studies at the IMPRS-CBSC supervised by Dr. Ralf Herwig

 

Posts by Matthias Lienhard

<prev • 24 results • page 3 of 3 • next >
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Answer: A: [MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, n
... Hi Pierre, as you are looping over the chromosomes and your code works for chr1 and fails for chr2, my first guess would be that there are no regions for chr2. Can you check for that? Best, Matthias Am 15.01.2014 05:13, schrieb Pierre Lindenbaum: > Hello, I'm trying to run the MEDIPS package ...
written 5.9 years ago by Matthias Lienhard140
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Comment: C: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome
... Now I' stumbled. That was exactly the line that cased the error in your function call. Does the error still occur if you call MEDIPS.createSet in the same session where get(ls(paste ... worked? Am 20.12.2013 15:53, schrieb Vining, Kelly: > OK, here's that output: > >> BSgenome = "BSgen ...
written 6.0 years ago by Matthias Lienhard140
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Comment: C: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome
... OK, that looks alright. What happens when prompting BSgenome = "BSgenome.Ptrichocarpa.Phytozome.v3" library(BSgenome.Ptrichocarpa.Phytozome.v3) get(ls(paste("package:",BSgenome, sep=""))) Am 20.12.2013 15:18, schrieb Vining, Kelly: > Hi Lukas, > Here's the output: > >> BSgenome = ...
written 6.0 years ago by Matthias Lienhard140
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Answer: A: Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: B
... Hi Kelly, yes, the MEDIPS extend parameter is supposed to be the size of the fragments that have been IP'd. Best, Matthias Am 16.12.2013 15:03, schrieb Hervé Pagès: > Hi Kelly, > > I'm afraid you're asking the wrong person, sorry. The best place to ask > this kind of question is on th ...
written 6.0 years ago by Matthias Lienhard140

Latest awards to Matthias Lienhard

Scholar 2.7 years ago, created an answer that has been accepted. For A: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
Autobiographer 5.1 years ago, has more than 80 characters in the information field of the user's profile.

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