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Answer: Answer: DiffBind dropping peaks in ATAC-seq data
8 months ago Malcolm Cook ★ 1.6k
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0
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1.1k
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Answer: Answer: GenomicRanges method to make the total width of ranges a certain value?
17 months ago Malcolm Cook ★ 1.6k
0
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0
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5.0k
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Answer: Answer: Any tools to convert .gff to .gtf format
19 months ago Malcolm Cook ★ 1.6k
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0
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3.4k
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Comment: Comment: LFQ shiny app from DEP package reports: Error: 'imputeMethods' is not an exporte
20 months ago Malcolm Cook ★ 1.6k
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0
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1.4k
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Answer: Answer: Error in trying to use Interactive analysis using the DEP Shiny apps (LFQ app)
20 months ago Malcolm Cook ★ 1.6k
0
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0
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1.0k
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Answer: Answer: bioMart Sscrofa_gene_ensembl getBM() paralogues ERROR
21 months ago Malcolm Cook ★ 1.6k
2
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2
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1.7k
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Answer: Answer: Combine GRanges(List) to a single GRanges with unified breakpoints
21 months ago Malcolm Cook ★ 1.6k
4
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0
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1.2k
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Answer: Answer: strand-aware GRanges shift
2.2 years ago Malcolm Cook ★ 1.6k
0
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0
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1.4k
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Comment: Comment: Gviz and datatracks
2.2 years ago Malcolm Cook ★ 1.6k
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1
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3.1k
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Answer: Answer: Subset GRanges by intersection
2.3 years ago Malcolm Cook ★ 1.6k
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0
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1.4k
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Answer: Answer: annotateWithGeneParts
2.9 years ago Malcolm Cook ★ 1.6k
2
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0
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902
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Answer: Answer: Produce quantile normalized expression values for use with BatchQC
3.1 years ago Malcolm Cook ★ 1.6k
0
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0
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1.9k
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Comment: C: Limma analysis with multiple variables
3.9 years ago Malcolm Cook ★ 1.6k
0
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0
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1.6k
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Comment: C: GenomicRanges object no longer viewable
3.9 years ago Malcolm Cook ★ 1.6k
0
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0
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1.6k
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Comment: C: GenomicRanges object no longer viewable
3.9 years ago Malcolm Cook ★ 1.6k
0
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1
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1.6k
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Comment: C: GenomicRanges object no longer viewable
3.9 years ago Malcolm Cook ★ 1.6k
0
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0
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640
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Comment: C: RSS for new packages unavailable?
4.4 years ago Malcolm Cook ★ 1.6k
3
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3
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640
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RSS for new packages unavailable?
RSS
4.4 years ago Malcolm Cook ★ 1.6k
2
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0
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1.9k
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Answer: A: Filtering GFF3 file
4.6 years ago Malcolm Cook ★ 1.6k
0
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0
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2.1k
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Comment: C: Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interope
5.1 years ago Malcolm Cook ★ 1.6k
0
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5
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2.1k
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Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interoperate with clusterProfiler in its absence?
annotation go clusterProfiler org.Sc.sgd.db
5.1 years ago Malcolm Cook ★ 1.6k
0
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0
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2.1k
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Answer: A: Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interope
5.1 years ago Malcolm Cook ★ 1.6k
0
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0
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1.7k
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Comment: C: Bug in makeOrgPackageFromNCBI from AnnotationForge?
5.1 years ago Malcolm Cook ★ 1.6k
0
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1
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2.1k
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Comment: C: Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interope
5.1 years ago Malcolm Cook ★ 1.6k
0
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1
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906
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Comment: C: GenomicFeatures supportedUCSCFeatureDbTracks never returns and has to be termina
5.4 years ago Malcolm Cook ★ 1.6k
0
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1
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906
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Comment: C: GenomicFeatures supportedUCSCFeatureDbTracks never returns and has to be termina
5.4 years ago Malcolm Cook ★ 1.6k
0
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5
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906
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GenomicFeatures supportedUCSCFeatureDbTracks never returns and has to be terminated with C-c
genomicfeatures bug
updated 5.4 years ago by 65k • written 5.4 years ago by ★ 1.6k
0
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0
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1.8k
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Comment: C: Reorder exons on negative strand in GRanges list
5.5 years ago Malcolm Cook ★ 1.6k
0
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1
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1.8k
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Comment: C: Reorder exons on negative strand in GRanges list
5.5 years ago Malcolm Cook ★ 1.6k
0
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0
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3.1k
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Comment: C: Element-wise setdiff when psetdiff fails for GenomicRanges
5.5 years ago Malcolm Cook ★ 1.6k
0
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1
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1.8k
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Comment: C: Reorder exons on negative strand in GRanges list
5.5 years ago Malcolm Cook ★ 1.6k
0
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0
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2.3k
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Comment: C: makeTxDbFromGFF errors too many NAs and make.splicings
5.6 years ago Malcolm Cook ★ 1.6k
2
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2
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2.1k
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Answer: A: extracting the genes associated with the groups or samples in pheatmap.
5.6 years ago Malcolm Cook ★ 1.6k
0
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0
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1.4k
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Answer: A: Counting exonic and intronic reads for differential gene expression
5.6 years ago Malcolm Cook ★ 1.6k
0
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0
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3.7k
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Comment: C: Function simplify fails when argument ont is set to "ALL" in enrichGO function i
5.6 years ago Malcolm Cook ★ 1.6k
0
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1
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3.5k
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Comment: C: CDS phase information missing from GenomicFeatures
5.7 years ago Malcolm Cook ★ 1.6k
0
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1
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3.5k
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Comment: C: CDS phase information missing from GenomicFeatures
5.7 years ago Malcolm Cook ★ 1.6k
0
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1
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2.6k
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Comment: C: nthreads option does NOT work in rsubread featureCounts
6.0 years ago Malcolm Cook ★ 1.6k
0
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0
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4.8k
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Comment: C: Error with featureCounts
6.0 years ago Malcolm Cook ★ 1.6k
0
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0
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932
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coercion to Granges from empty data.frame ==> unexpected behavior ??
granges coercion
6.2 years ago Malcolm Cook ★ 1.6k
0
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0
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3.2k
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Answer: A: get vertex xy coords from igraph mst plot
6.5 years ago Malcolm Cook ★ 1.6k
1
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1
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2.3k
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Comment: C: Extract isoform-specific ranges
6.6 years ago Malcolm Cook ★ 1.6k
0
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1
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2.3k
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Comment: C: Extract isoform-specific ranges
6.6 years ago Malcolm Cook ★ 1.6k
1
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1
reply
2.3k
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Comment: C: Extract isoform-specific ranges
6.7 years ago Malcolm Cook ★ 1.6k
2
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1
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2.3k
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Answer: A: Extract isoform-specific ranges
6.7 years ago Malcolm Cook ★ 1.6k
1
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0
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2.3k
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Comment: C: Extract isoform-specific ranges
6.7 years ago Malcolm Cook ★ 1.6k
0
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0
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868
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HowTo: install just html help on top of existing packages
bioclite package installation update
7.1 years ago Malcolm Cook ★ 1.6k
1
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1
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8.3k
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Comment: C: Which package to run blast
7.7 years ago Malcolm Cook ★ 1.6k
1
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1
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8.3k
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Answer: A: Which package to run blast
7.7 years ago Malcolm Cook ★ 1.6k
0
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1
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1.2k
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HowTo? Provide a different fill color for each rectangle in an Gviz AnnotationTrack ?
Gviz color
updated 7.7 years ago by ★ 1.6k • written 7.7 years ago by ★ 1.6k
191 results • Page 1 of 4
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