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Answer: Answer: DiffBind dropping peaks in ATAC-seq data
8 months ago Malcolm Cook ★ 1.6k
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1.1k
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Answer: Answer: GenomicRanges method to make the total width of ranges a certain value?
17 months ago Malcolm Cook ★ 1.6k
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5.0k
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Answer: Answer: Any tools to convert .gff to .gtf format
19 months ago Malcolm Cook ★ 1.6k
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1.4k
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Answer: Answer: Error in trying to use Interactive analysis using the DEP Shiny apps (LFQ app)
20 months ago Malcolm Cook ★ 1.6k
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1.0k
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Answer: Answer: bioMart Sscrofa_gene_ensembl getBM() paralogues ERROR
21 months ago Malcolm Cook ★ 1.6k
2
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2
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1.7k
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Answer: Answer: Combine GRanges(List) to a single GRanges with unified breakpoints
21 months ago Malcolm Cook ★ 1.6k
4
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1.2k
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Answer: Answer: strand-aware GRanges shift
2.2 years ago Malcolm Cook ★ 1.6k
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1
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3.1k
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Answer: Answer: Subset GRanges by intersection
2.3 years ago Malcolm Cook ★ 1.6k
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1.4k
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Answer: Answer: annotateWithGeneParts
2.9 years ago Malcolm Cook ★ 1.6k
2
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0
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902
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Answer: Answer: Produce quantile normalized expression values for use with BatchQC
3.1 years ago Malcolm Cook ★ 1.6k
2
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0
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1.9k
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Answer: A: Filtering GFF3 file
4.6 years ago Malcolm Cook ★ 1.6k
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2.1k
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Answer: A: Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interope
5.1 years ago Malcolm Cook ★ 1.6k
2
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2
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2.1k
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Answer: A: extracting the genes associated with the groups or samples in pheatmap.
5.6 years ago Malcolm Cook ★ 1.6k
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1.4k
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Answer: A: Counting exonic and intronic reads for differential gene expression
5.6 years ago Malcolm Cook ★ 1.6k
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3.2k
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Answer: A: get vertex xy coords from igraph mst plot
6.5 years ago Malcolm Cook ★ 1.6k
2
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1
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2.3k
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Answer: A: Extract isoform-specific ranges
6.7 years ago Malcolm Cook ★ 1.6k
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1
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8.3k
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Answer: A: Which package to run blast
7.7 years ago Malcolm Cook ★ 1.6k
0
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1
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3.7k
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Answer: A: GRanges - add names when constructing a new GRanges, rather than afterwards?
8.6 years ago Malcolm Cook ★ 1.6k
2
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1
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6.7k
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Answer: A: Importing a .txt file with multiple headers into R
9.0 years ago Malcolm Cook ★ 1.6k
0
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1
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681
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Answer: A: Bioconductor newsletter: April 2014
10.1 years ago Malcolm Cook ★ 1.6k
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0
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3.9k
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Answer: A: fasta biostrings bioconductor
10.1 years ago Malcolm Cook ★ 1.6k
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1
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2.5k
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Answer: A: scholarly reference for "don't draw PCA/heatmap dendrograms on DEGs"
10.4 years ago Malcolm Cook ★ 1.6k
0
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1
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788
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Answer: A: Gviz - Plot genes and data from - strand (3'-5') in 5'-3' direction
10.4 years ago Malcolm Cook ★ 1.6k
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1
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1.9k
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Answer: A: bug in GenomicRanges gaps?
10.6 years ago Malcolm Cook ★ 1.6k
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1
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2.7k
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Answer: A: Order within a GRanges object
10.7 years ago Malcolm Cook ★ 1.6k
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1
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1.6k
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Answer: A: makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
10.9 years ago Malcolm Cook ★ 1.6k
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1
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1.3k
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Answer: A: [Rd] enabling reproducible research & R package management & install.package.ver
11.1 years ago Malcolm Cook ★ 1.6k
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0
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2.2k
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Answer: A: new package for generating interactive HTML reports
11.3 years ago Malcolm Cook ★ 1.6k
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12k
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Answer: A: subset GRanges
11.3 years ago Malcolm Cook ★ 1.6k
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1
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1.0k
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Answer: A: pooling for parallel hierarchical operations
11.4 years ago Malcolm Cook ★ 1.6k
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1.6k
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Answer: A: getting masked sequence from BSgenome: can I use Views or getSeq?
11.4 years ago Malcolm Cook ★ 1.6k
0
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1
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1.4k
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Answer: A: Error in makeTranscriptDbFromBiomart
11.5 years ago Malcolm Cook ★ 1.6k
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1
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1.2k
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Answer: A: distanceToNearest for GRanges?
12.0 years ago Malcolm Cook ★ 1.6k
0
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1
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1.3k
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Answer: A: load a TranscriptDb object in another R session?
12.0 years ago Malcolm Cook ★ 1.6k
1
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1
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991
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Answer: A: distanceToNearest for GRanges?
12.1 years ago Malcolm Cook ★ 1.6k
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0
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1.5k
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Answer: A: [Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart dat
12.1 years ago Malcolm Cook ★ 1.6k
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0
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958
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Answer: A: "internal equal" overlap mode for GRangesList
12.5 years ago Malcolm Cook ★ 1.6k
0
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0
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1.9k
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Answer: A: GFF3 format from ucsc
18.7 years ago Malcolm Cook ★ 1.6k
38 results • Page 1 of 1
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