User: yun YAN

gravatar for yun YAN
yun YAN20
Reputation:
20
Status:
New User
Location:
Canada
Last seen:
3 months, 1 week ago
Joined:
5 years, 5 months ago
Email:
y*********@gmail.com

Posts by yun YAN

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Visualize lineage tree using ggtree
... Delete this answer to anyone who has the administrative power, since this is a comment from myself, rather than answer. ...
written 2.9 years ago by yun YAN20
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Comment: C: Visualize lineage tree using ggtree
... v <- '((D,E)C,((((((((((((LONGGGGG,SHORT)LOVE, HATE)Y,Z)W,X)U,V)S,T)Q,R)O,P)L,M)I,J)H,K)F,G)B)A;' ggtree(read.tree(text=v)) +   # theme(plot.margin=unit(c(1,5,1.5,1.2),"cm")) +   geom_point() +   geom_text(aes(label=label), hjust=-.5) plot(read.tree(text=v), show.node=TRUE, cex=.5)   The label ...
written 2.9 years ago by yun YAN20
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Comment: C: Visualize lineage tree using ggtree
... Amazing ;-) ...
written 3.0 years ago by yun YAN20
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Visualize lineage tree using ggtree
... I was wondering is it possible to visualize tree structure, in particular the branch nodes are shown.   The example is from wikipedia (https://en.wikipedia.org/wiki/Newick_format) and tree in the newick format is: (A:0.1,B:0.2,(C:0.3,D:0.4)E:0.5)F; I can visualize tree by ggtree, but I did not ...
ggtree lineage written 3.0 years ago by yun YAN20
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ChemmineOB cannot find installed open-babel
... I have installed ChemmineOB and also open-babel but when the package is called inside R console, it seems that my open-babel is not found. Actually open-babel could be called by using its command line in terminal. I got confused and any suggestions will help a lot.  Thank you so much.    install ...
chemmineob openbabel written 4.8 years ago by yun YAN20 • updated 4.8 years ago by Dan Tenenbaum8.2k
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Comment: C: The ambiguous alignment examples in findMateAlignment don't have to be dumped
... Hi Hervé, Thanks for your tips on `readGAlignmentsList`. Unlike `readGAlignmentPairs`, it is not compatible with `first`, `last`, `left`, `right` function with feedbacks: unable to find an inherited method for function ‘first’ for signature > ‘"GAlignmentsList"’ I'd better speak out that the g ...
written 5.5 years ago by yun YAN20
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The ambiguous alignment examples in findMateAlignment don't have to be dumped
... Hi Hervé Pagès and other maintainers in Bioconductor, Thanks for your package instruction ( http://140.107.3.20/packages/2.14/bioc/manuals/GenomicAlignments/man/G enomicAlignments.pdf) so that I could understand the how does it work. Here you mentioned the dumped alignments but I was wondering whet ...
alignment written 5.5 years ago by yun YAN20 • updated 5.5 years ago by Hervé Pagès ♦♦ 14k

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Popular Question 2.9 years ago, created a question with more than 1,000 views. For ChemmineOB cannot find installed open-babel

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