## User: yun YAN

yun YAN20
Reputation:
20
Status:
New User
Location:
Last seen:
2 months, 2 weeks ago
Joined:
5 years, 8 months ago
Email:
y*********@gmail.com

#### Posts by yun YAN

<prev • 7 results • page 1 of 1 • next >
2
962
views
2
... Delete this answer to anyone who has the administrative power, since this is a comment from myself, rather than answer. ...
written 3.1 years ago by yun YAN20
2
962
views
2
... v <- '((D,E)C,((((((((((((LONGGGGG,SHORT)LOVE, HATE)Y,Z)W,X)U,V)S,T)Q,R)O,P)L,M)I,J)H,K)F,G)B)A;' ggtree(read.tree(text=v)) +   # theme(plot.margin=unit(c(1,5,1.5,1.2),"cm")) +   geom_point() +   geom_text(aes(label=label), hjust=-.5) plot(read.tree(text=v), show.node=TRUE, cex=.5)   The label ...
written 3.1 years ago by yun YAN20
2
962
views
2
... Amazing ;-) ...
written 3.2 years ago by yun YAN20
2
962
views
2
... I was wondering is it possible to visualize tree structure, in particular the branch nodes are shown.   The example is from wikipedia (https://en.wikipedia.org/wiki/Newick_format) and tree in the newick format is: (A:0.1,B:0.2,(C:0.3,D:0.4)E:0.5)F; I can visualize tree by ggtree, but I did not ...
written 3.2 years ago by yun YAN20
1
2.2k
views
1
... I have installed ChemmineOB and also open-babel but when the package is called inside R console, it seems that my open-babel is not found. Actually open-babel could be called by using its command line in terminal. I got confused and any suggestions will help a lot.  Thank you so much.    install ...
written 5.0 years ago by yun YAN20 • updated 5.0 years ago by Dan Tenenbaum8.2k
1
740
views
1
... Hi Hervé, Thanks for your tips on readGAlignmentsList. Unlike readGAlignmentPairs, it is not compatible with first, last, left, right function with feedbacks: unable to find an inherited method for function first for signature > "GAlignmentsList" I'd better speak out that the g ...
written 5.7 years ago by yun YAN20
1
740
views
1
... Hi Hervé Pagès and other maintainers in Bioconductor, Thanks for your package instruction ( http://140.107.3.20/packages/2.14/bioc/manuals/GenomicAlignments/man/G enomicAlignments.pdf) so that I could understand the how does it work. Here you mentioned the dumped alignments but I was wondering whet ...
written 5.7 years ago by yun YAN20 • updated 5.7 years ago by Hervé Pagès ♦♦ 14k

#### Latest awards to yun YAN

Popular Question 3.1 years ago, created a question with more than 1,000 views. For ChemmineOB cannot find installed open-babel

Content
Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.