User: Miskey, Csaba

gravatar for Miskey, Csaba
Reputation:
20
Status:
New User
Location:
Germany
Last seen:
3 months, 3 weeks ago
Joined:
4 years, 7 months ago
Email:
c***********@pei.de

Posts by Miskey, Csaba

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Gage package; go.gset() function error: argument "go_id" is missing
... This is what worked for me to compile R 3.5.0 from source to my home on Ubuntu 14.04.5 LTS: ./configure CFLAGS=-fPIC CXXFLAGS=-fPIC --enable-shared --prefix=/home/miscs/R/Rversions/3.5.0 --enable-R-shlib --with-blas --with-lapack --with-tcktk   ...
written 3 months ago by Miskey, Csaba20
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Comment: C: Gage package; go.gset() function error: argument "go_id" is missing
... Great! Many thanks, James! ...
written 4 months ago by Miskey, Csaba20
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Comment: C: Gage package; go.gset() function error: argument "go_id" is missing
... Hi James, I wanted upgrade, but BiocInstaller 1.3 needs R >= 3.5.0 source("https://bioconductor.org/biocLite.R") "Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help A new version of Bioconductor is available after installing the most recent version of R; see http://bioconduct ...
written 4 months ago by Miskey, Csaba20
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Comment: C: Gage package; go.gset() function error: argument "go_id" is missing
... I should have checked. Many thanks!   ...
written 4 months ago by Miskey, Csaba20
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Gage package; go.gset() function error: argument "go_id" is missing
... Dear All, The go.gsets function of gage send the following error: go.hs <- go.gsets(species="human") Gene ID type for 'human' is: 'EG' Error in initialize(value, ...) :   argument "go_id" is missing, with no default Where should the 'go_id' argument be specified? kg.hsa <- kegg.gsets(s ...
error gage package written 4 months ago by Miskey, Csaba20 • updated 4 months ago by James W. MacDonald47k
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getSeq with GRanges object error: function not found
... I want to retrieve genomic sequences strand specifically from hg19. The coordinates are in a data frame, I make GRanges object out of it and try to use getSeq.  getSeq gives me the error message below. What's wrong?  Any alternative way?  Many thanks! Csaba > df <- data.frame(chr="chr1", st ...
bsgenome biostrings granges written 4.0 years ago by Miskey, Csaba20 • updated 4.0 years ago by Martin Morgan ♦♦ 22k
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BSgenomes pig
... Dear Herve, I would like to kindly request the pig genome for the BSgenome package. I would appreciate your help. Best, Csaba [[alternative HTML version deleted]] ...
written 4.6 years ago by Miskey, Csaba20 • updated 4.6 years ago by Hervé Pagès ♦♦ 13k

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