User: Aileen Bahl

gravatar for Aileen Bahl
Aileen Bahl10
Reputation:
10
Status:
New User
Location:
Finland
Last seen:
4 years ago
Joined:
5 years, 3 months ago
Email:
a**********@helsinki.fi

Posts by Aileen Bahl

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Use of confounders in downstream analysis
... I also define according to the location of the CpG site. I assign every CpG on or up to 1,500 bp upstream of the corresponding gene to the corresponding gene (just as it is done in illuminaHumanMethylation450k.db). However, no matter how one defines the associations between CpGs and genes, the probl ...
written 4.1 years ago by Aileen Bahl10
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Answer: A: Use of confounders in downstream analysis
... Hi, thanks for your answer!  I already used bumphunter but it couldn't identify any significant bumps. So, we would still like to use GSA in order to see whether there are any pathways with higher or lower methylation across multiple genes in this pathway. This would be done separately for methyla ...
written 4.1 years ago by Aileen Bahl10
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Use of confounders in downstream analysis
... Dear all,   I have some problems in understanding how exactly to include confounders in my downstream analysis. I will provide a short description of my analysis and problem and I would be very happy if some of you could help me understanding how exactly to go ahead with that:   I normalized 450 ...
limma 450k gsa confounding within-pair analysis written 4.1 years ago by Aileen Bahl10
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Coercion lumi/minfi objects
... Dear all, I used lumi to analyze my 450k data. Now, I want to use the Houseman algorithm to correct for the cell composition. As far as I read, the implementation in minfi covers several changes of the algorithm for the 450k platform. Therefore, I would like to use this package instead of changing ...
lumi minfi written 5.3 years ago by Aileen Bahl10 • updated 5.2 years ago by Tim Triche4.2k

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