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1.1k
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Answer:
A: Filter low counts OTUs from a MRfull table to prepare a heatmap
6.2 years ago
Joseph Nathaniel Paulson
▴ 280
1
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1.1k
views
Answer:
A: Including taxa names in heatmap in metagenomeseq
6.2 years ago
Joseph Nathaniel Paulson
▴ 280
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0
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1.7k
views
Answer:
A: Should I normalize communities separately with metagenomeseq?
6.4 years ago
Joseph Nathaniel Paulson
▴ 280
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0
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1.6k
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Answer:
A: Where to find open access microbiome data for case-control comparative study?
7.0 years ago
Joseph Nathaniel Paulson
▴ 280
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0
replies
1.1k
views
Answer:
A: metagenomeSeq: role for fitLogNormal?
7.0 years ago
Joseph Nathaniel Paulson
▴ 280
1
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0
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4.0k
views
Answer:
A: Difference between fitFeatureModel and fitZIG in metagenomeSeq
7.0 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
1
reply
1.1k
views
Answer:
A: metagenomeSeq 1.16.0: unique features give NA's for logFC / p-val?
7.0 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
1
reply
1.8k
views
Answer:
A: metagenomeSeq log transformation
7.2 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
1
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1.4k
views
Answer:
A: MetagenomeSeq: Sorting by sample type in plotMRheatmap
7.2 years ago
Joseph Nathaniel Paulson
▴ 280
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0
replies
1.5k
views
Answer:
A: metagenomeSeq: cumNormStat normalization default
7.3 years ago
Joseph Nathaniel Paulson
▴ 280
1
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1
reply
1.3k
views
Answer:
A: error using fitTimeSeries in metagenomeSeq
7.5 years ago
Joseph Nathaniel Paulson
▴ 280
0
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0
replies
1.3k
views
Answer:
A: error using fitTimeSeries in metagenomeSeq
7.5 years ago
Joseph Nathaniel Paulson
▴ 280
0
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0
replies
1.0k
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Answer:
A: Understand fold changes
7.5 years ago
Joseph Nathaniel Paulson
▴ 280
0
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1
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2.5k
views
Answer:
A: paired analysis using metagenomeSeq
7.5 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
1
reply
3.5k
views
Answer:
A: DESeq2 16s microbiome size factors
7.6 years ago
Joseph Nathaniel Paulson
▴ 280
2
votes
0
replies
1.5k
views
Answer:
A: Metagenome seq errors using biom (1.3) file
7.6 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
0
replies
896
views
Answer:
A: fitTimeSeries possible error
7.7 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
0
replies
1.3k
views
Answer:
A: metagenomeSeq for continuous phenotype
7.7 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
1
reply
2.0k
views
Answer:
A: Analyzing microbiome data (many zero-counts) using DESeq2
7.7 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
0
replies
1.7k
views
Answer:
A: fitZig coefficient for interaction terms?
7.8 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
0
replies
1.0k
views
Answer:
A: Aggregate By Taxonomy Error
7.8 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
1
reply
1.6k
views
Answer:
A: Normalisation problem in metagenomeSeq
7.9 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
1.2k
views
Answer:
A: Multiple variables in fitFeaturemodel
8.1 years ago
Joseph Nathaniel Paulson
▴ 280
2
votes
1
reply
2.5k
views
Answer:
A: Interpretation for MRfulltable of fitzig in Metagenomeseq
8.1 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
0
replies
1.7k
views
Answer:
A: Random effects metagenomeSeq
8.2 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
1.2k
views
Answer:
A: metagenomeSeq - normFactors
8.4 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
1
reply
1.7k
views
Answer:
A: creating a subsetted MRexperiment based on sample name?
8.7 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
1
reply
1.7k
views
Answer:
A: creating a subsetted MRexperiment based on sample name?
8.7 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
2
replies
3.2k
views
Answer:
A: edgeR for metagenomic data
8.8 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
0
replies
1.9k
views
Answer:
A: metagenomeSeq cumNorm issue with NAs in real data
8.9 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
0
replies
1.9k
views
Answer:
A: metagenomeSeq cumNorm issue with NAs in real data
9.0 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
1.9k
views
Answer:
A: Normalization factors in metagenomeSeq
9.0 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
1.1k
views
Answer:
A: Metagenomeseq package; time series analysis
9.0 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
1.4k
views
Answer:
A: Omission of final edge in correlationTest
9.1 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
1
reply
2.2k
views
Answer:
A: normFactors when aggregating in metagenomeSeq
9.1 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
3.0k
views
Answer:
A: Low quantile estimate using CSS normalization in metagenomeSeq
9.2 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
1.5k
views
Answer:
A: Problem reproducing metagenomeSeq tutorial example
9.2 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
1.3k
views
Answer:
A: no timeInterval output using fitTimeSeries
9.2 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
1.5k
views
Answer:
A: error using fitTimeSeries from metagenomeSeq
9.2 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
1.7k
views
Answer:
A: metagenomeSeq error using plotMRheatmap and display() heatmaps and PCA/MDS plots
9.2 years ago
Joseph Nathaniel Paulson
▴ 280
2
votes
0
replies
2.5k
views
Answer:
A: metagenomeSeq error using cumNormStatFast
9.2 years ago
Joseph Nathaniel Paulson
▴ 280
1
vote
0
replies
2.3k
views
Answer:
A: error with metagenomeSeq newMRexperiment
9.2 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
0
replies
1.2k
views
Answer:
A: error with fitTimeSeries in metagenomeSeq" invalid 'times’ argument"
9.4 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
0
replies
1.5k
views
Answer:
A: mouseData in heatmap of metagenomeSeq package
10.1 years ago
Joseph Nathaniel Paulson
▴ 280
0
votes
0
replies
1.4k
views
Answer:
A: error on heatmap
10.1 years ago
Joseph Nathaniel Paulson
▴ 280
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