User: Panos Bolan

gravatar for Panos Bolan
Panos Bolan20
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Last seen:
5 years ago
Joined:
5 years, 2 months ago
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p*******@hotmail.com

Posts by Panos Bolan

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Answer: A: limma: strange subsetting fit[, i] of "MArrayLM" object`s design matrix, also ro
... Dear list, I recently read a Bioconductor post where the developer of the WGCNA suggested the use of the package for RNA-seq data analysis after implementing a variance stabilization normalization to the raw counts. I have read the tutorials and run the example dataset at http://labs.g enetics.ucla ...
written 5.0 years ago by Panos Bolan20
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Orthogonal regression (edgeR, DESeq, limma or others)?
... Dear list, I am a postdoc in Bioinformatics, working on gene/gene regulation using RNA-seq data. I would like to find the associations for a set of gene pairs that my collaborator sent me. I have 1000 such pairs whose counts are measured for 400 samples. One way to do it would be by simple correla ...
limma edger deseq written 5.2 years ago by Panos Bolan20 • updated 5.2 years ago by Gordon Smyth37k

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