User: Cherif Ben Hamda

Reputation:
150
Status:
Trusted
Location:
Tunisia
Website:
http://www.cherifbenha...
Last seen:
1 year, 1 month ago
Joined:
5 years, 1 month ago
Email:
c*************@gmail.com

Posts by Cherif Ben Hamda

<prev • 15 results • page 1 of 2 • next >
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Answer: A: Meta-analysis of gene expression data by 'MetaDE'
... Sorry For the late reply    #(maybe my response will be useful for for someone else) Your x have to be list object with components :  - p :  list of p values for each dataset. so add the line below :  x<-list(p=x) and then  MetaDE.pvalue(x,meta.method='minP') Cheers    ...
written 3.4 years ago by Cherif Ben Hamda150
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Answer: A: genefilter installation error
... Hi Subinoy, Tap this line in consol sudo apt-get install libcurl4-openssl-dev libxml2-dev And this in R install.packages("RCurl") install.packages("XML") After that : source("http://bioconductor.org/biocLite.R") biocLite("genefilter") Tell me if it works Best Cherif Le 24 ao?t 2014 06:33, "Su ...
written 4.7 years ago by Cherif Ben Hamda150
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how to remove probeset
... hi, if you use affymetrix don't forget to remove AFFX probset. So, you use affymetrix ? Best, Cherif 2014-06-27 15:07 GMT+01:00 James W. MacDonald : > This question isn't well specified. What exactly do you mean by > 'annotation'? You don't say what array you are using either. > > In ...
annotation limma written 4.9 years ago by Cherif Ben Hamda150
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Connectons-nous sur LinkedIn
... LinkedIn ------------ Bioconductor, J'aimerais vous inviter à rejoindre mon réseau professionnel en ligne, sur le site LinkedIn. BEN HAMDA BEN HAMDA Cherif Étudiant à Université de Tunis El Manar Tunisie Veuillez confirmer que vous connaissez BEN HAMDA Cherif : https://www.linkedin.com/ ...
written 5.0 years ago by Cherif Ben Hamda150
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package "affy" & "simpleaffy"
... hello, I need help please, I show you the error mesage : > path = getwd() > celfiles <- read.affy(covdesc="phenodata.txt", path= path) Error: cannot allocate vector of size 310.1 Mb In addition: Warning messages: 1: In readLines(filename) : incomplete final line found on 'C:/Users/be ...
written 5.1 years ago by Cherif Ben Hamda150 • updated 5.1 years ago by Vincent J. Carey, Jr.6.3k
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Comment: C: logFC , Limma (microArray Analysis)
... Hi Jim, Thank you for your response. It's Ok right know. thanks a lot Best, Cherif 2014-04-07 15:01 GMT+01:00 James W. MacDonald : > Hi Cherif, > > It would be a good idea to look at the data first. I simply googled your > GSE number and clicked on one of the samples, and it says th ...
written 5.1 years ago by Cherif Ben Hamda150
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Comment: C: logFC , Limma (microArray Analysis)
... Hi Gordon, Thank you for your response. It's Ok right know Thank you very much Best, Cherif [[alternative HTML version deleted]] ...
written 5.1 years ago by Cherif Ben Hamda150
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logFC , Limma (microArray Analysis)
... Hello Hope that everything is good for you ! i have a strange results in my work ( series_matrix.txt microarray analysis ) and i don't know if it's normal or not ! i get high value (logFC) logFC AveExpr t P.Value adj.P.Val B 14990 *184.8393 *279.5879 7.0532 ...
limma written 5.1 years ago by Cherif Ben Hamda150 • updated 5.1 years ago by James W. MacDonald50k
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Comment: C: package affy / biobase problem with function "geneNames"
... Hi Jim, I have no sudo privileges I will contact the administrator Monday and I will answer after that Thank you Best, Cherif 2014-04-04 16:47 GMT+01:00 James W. MacDonald : > Hi Cherif, > > You don't want to upgrade when you have a bunch of packages already > loaded. Restart R and t ...
written 5.1 years ago by Cherif Ben Hamda150
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Comment: C: package affy / biobase problem with function "geneNames"
... and right now when i try to upgrade one more i have this message * DONE (BiocInstaller) The downloaded source packages are in '/tmp/Rtmp9PxG1j/downloaded_packages' BiocInstaller version 1.4.9, ?biocLite for help A newer version of Bioconductor is available for this version of R, ?BiocUpgrade for ...
written 5.1 years ago by Cherif Ben Hamda150

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Popular Question 2.1 years ago, created a question with more than 1,000 views. For package affy / biobase problem with function "geneNames"

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