User: AROA SUÁREZ VEGA

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Posts by AROA SUÁREZ VEGA

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Comment: C: Analysis with DESeq2: should I put all the samples from three conditions in the
... Thank you very much for your help, sorry I hadn't read that ...
written 10 days ago by AROA SUÁREZ VEGA20
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Analysis with DESeq2: should I put all the samples from three conditions in the ColData and CountData or perform the analysis separately
... Hello! I am performing my differential expression RNA-Seq analysis with DESeq2. I have the following design, with three conditions ID_seq  ID_animal            Condition            C8DRYANXX_4_22           LUFO209              FO          C8DRYANXX_4_25           LUFO219              FO          ...
deseq2 written 10 days ago by AROA SUÁREZ VEGA20 • updated 10 days ago by Michael Love14k
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DESeq2
... Hi Michael, Now that the new version is available I have some doubts about how to do the contrast. I run the following commands: ##Loading DESeq2 source("http://bioconductor.org/biocLite.R") biocLite("DESeq2") library("DESeq2") setwd("~/DESeq2") milk<- read.csv("global_count_genes_mi ...
deseq2 written 3.5 years ago by AROA SUÁREZ VEGA20 • updated 3.5 years ago by Michael Love14k
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Comment: C: DESeq2
... Thank you very much for your answer, so if I understand well, even I don't have interaction I need to use the model with the interaction term, isn't it? Aroa Suárez Vega PhD student Dpto. Producción Animal Facultad de Veterinaria Campus de Vegazana s/n 24071 Leon Telef. 987291000 Ext. 5296 2014-0 ...
written 3.6 years ago by AROA SUÁREZ VEGA20

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