User: AROA SUÁREZ VEGA

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6 months ago
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4 years, 5 months ago
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Posts by AROA SUÁREZ VEGA

<prev • 6 results • page 1 of 1 • next >
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Problem retrieving data from "ENSEMBL_MART_SNP" database
... Hi all, I have a problem using "ENSEMBL_MART_SNP". I have a list of 2400 SNPs and I want to find the genes associated to these SNPs using biomart. When I use the database "ENSEMBL_MART_SNP" with the following commands: ensembl <- useMart(biomart = "ENSEMBL_MART_SNP",                  dataset = ...
biomart ensembl written 6 months ago by AROA SUÁREZ VEGA20
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Comment: C: Analysis with DESeq2: should I put all the samples from three conditions in the
... Thank you very much for your help, sorry I hadn't read that ...
written 10 months ago by AROA SUÁREZ VEGA20
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Analysis with DESeq2: should I put all the samples from three conditions in the ColData and CountData or perform the analysis separately
... Hello! I am performing my differential expression RNA-Seq analysis with DESeq2. I have the following design, with three conditions ID_seq  ID_animal            Condition            C8DRYANXX_4_22           LUFO209              FO          C8DRYANXX_4_25           LUFO219              FO          ...
deseq2 written 10 months ago by AROA SUÁREZ VEGA20 • updated 10 months ago by Michael Love19k
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DESeq2
... Hi Michael, Now that the new version is available I have some doubts about how to do the contrast. I run the following commands: ##Loading DESeq2 source("http://bioconductor.org/biocLite.R") biocLite("DESeq2") library("DESeq2") setwd("~/DESeq2") milk<- read.csv("global_count_genes_mi ...
deseq2 written 4.4 years ago by AROA SUÁREZ VEGA20 • updated 4.4 years ago by Michael Love19k
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Comment: C: DESeq2
... Thank you very much for your answer, so if I understand well, even I don't have interaction I need to use the model with the interaction term, isn't it? Aroa Suárez Vega PhD student Dpto. Producción Animal Facultad de Veterinaria Campus de Vegazana s/n 24071 Leon Telef. 987291000 Ext. 5296 2014-0 ...
written 4.5 years ago by AROA SUÁREZ VEGA20

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