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Batch correction in deseq2
DESeq2
updated 20 months ago by ★ 1.3k • written 20 months ago by ▴ 40
0
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1
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663
views
using deseq2 for intronic counts for 2 conditins with replicates
deseq2 intron differential expression
updated 4.1 years ago by 41k • written 4.1 years ago by ▴ 40
0
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1
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2.2k
views
Comment: C: extract TCGA barcodes and sample_type information from uuids
4.2 years ago gv ▴ 40
0
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4
replies
2.2k
views
extract TCGA barcodes and sample_type information from uuids
GenomicDataCommons R
updated 2.7 years ago by ▴ 50 • written 4.2 years ago by ▴ 40
3
votes
1
reply
681
views
logFC in limma
limma logFC
updated 4.3 years ago by 65k • written 4.3 years ago by ▴ 40
1
vote
1
reply
878
views
model matrix in limma
limma R
updated 4.4 years ago by 50k • written 4.4 years ago by ▴ 40
0
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1
reply
1.8k
views
Comment: C: Comparing factor levels in deseq2
4.4 years ago gv ▴ 40
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3
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1.8k
views
Comparing factor levels in deseq2
deseq2
4.4 years ago gv ▴ 40
0
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1
reply
999
views
Comment: C: null model and DEXSeqDataSet object in DEXSEQ
5.0 years ago gv ▴ 40
1
vote
3
replies
999
views
null model and DEXSeqDataSet object in DEXSEQ
deseq2 dexseq
5.0 years ago gv ▴ 40
0
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2
replies
1.2k
views
Comment: C: estimateDispersions calculation for > 500,000 exons for 2 conditions taking fore
5.0 years ago gv ▴ 40
2
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6
replies
1.2k
views
estimateDispersions calculation for > 500,000 exons for 2 conditions taking forever
deseq2 dexseq
5.0 years ago gv ▴ 40
0
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1
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1.2k
views
Comment: C: estimateDispersions calculation for > 500,000 exons for 2 conditions taking fore
5.0 years ago gv ▴ 40
0
votes
1
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24k
views
Comment: C: plotMA in deseq2
updated 5.5 years ago by 41k • written 5.5 years ago by ▴ 40
0
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3
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24k
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plotMA in deseq2
deseq2
updated 5.5 years ago by 41k • written 5.5 years ago by ▴ 40
0
votes
1
reply
2.0k
views
Plotting coverage from bam files
bam plot
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 40
0
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1
reply
1.1k
views
pca plot for tissues and protein values
pca
updated 6.9 years ago by 65k • written 6.9 years ago by ▴ 40
0
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0
replies
735
views
DEXSeq : for differential exon usage
DEXSeq R
7.0 years ago gv ▴ 40
0
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1
reply
2.5k
views
Making a gff file for introns to be used with DEXSEQ
dexseq
updated 7.1 years ago by 16k • written 7.1 years ago by ▴ 40
0
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1
reply
2.8k
views
Comment: C: deseq2 estimating size factors
8.0 years ago gv ▴ 40
6
votes
4
replies
2.8k
views
deseq2 estimating size factors
r deseq2
updated 8.0 years ago by 41k • written 8.0 years ago by ▴ 40
1
vote
3
replies
1.7k
views
Microarray data analysis for detecting alternative splicing
microarray splicing
updated 8.2 years ago by ▴ 20 • written 9.5 years ago by ▴ 40
0
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1
reply
2.7k
views
Comment: C: DESeq2 rna seq analysis
8.9 years ago gv ▴ 40
0
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1
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2.7k
views
Comment: C: DESeq2 rna seq analysis
8.9 years ago gv ▴ 40
0
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1
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2.7k
views
Comment: C: DESeq2 rna seq analysis
8.9 years ago gv ▴ 40
1
vote
6
replies
2.7k
views
DESeq2 rna seq analysis
deseq2
updated 8.9 years ago by ★ 13k • written 8.9 years ago by ▴ 40
0
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0
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2.2k
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unable to find an inherited method for function ‘Rle’ for signature ‘"NULL", "missing"
r
8.9 years ago gv ▴ 40
1
vote
3
replies
2.4k
views
ddCt calculation using bioconductor package
ddct qPCR
updated 2.9 years ago by ▴ 60 • written 9.1 years ago by ▴ 40
0
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1
reply
3.2k
views
read.celfiles error
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 40
0
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0
replies
1.4k
views
Plotting per base coverage from genomecoveragebed utility
graph graph
10.0 years ago gv ▴ 40
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