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Tutorial: [LIBD rstats club] Bioconductor overview
bioconductor libdrstats Tutorial
written 5.8 years ago by ★ 1.1k
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Answer: Answer: Retrieve Salmon transcript quantification file from recount3
8 months ago Leonardo Collado Torres ★ 1.1k
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3.2k
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Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
10 months ago Leonardo Collado Torres ★ 1.1k
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0
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3.2k
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Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
10 months ago Leonardo Collado Torres ★ 1.1k
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1
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3.2k
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Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
10 months ago Leonardo Collado Torres ★ 1.1k
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0
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3.2k
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Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
10 months ago Leonardo Collado Torres ★ 1.1k
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0
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1.4k
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Comment: Comment: Recount3 data correspond to TCGA data
12 months ago Leonardo Collado Torres ★ 1.1k
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0
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751
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Answer: Answer: Margins for gene_set_enrichment_plot
14 months ago Leonardo Collado Torres ★ 1.1k
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0
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751
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Comment: Comment: Margins for gene_set_enrichment_plot
14 months ago Leonardo Collado Torres ★ 1.1k
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1.0k
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Answer: Answer: Merging multi-fastq samples in recount3
18 months ago Leonardo Collado Torres ★ 1.1k
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1.4k
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Answer: Answer: recount
18 months ago Leonardo Collado Torres ★ 1.1k
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1
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1.4k
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Answer: Answer: Recount3: PCR duplicates
19 months ago Leonardo Collado Torres ★ 1.1k
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979
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Answer: Answer: Recount3 error downloading data
20 months ago Leonardo Collado Torres ★ 1.1k
1
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0
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1.4k
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Comment: Comment: recount3 problem downloading data from source sra
21 months ago Leonardo Collado Torres ★ 1.1k
2
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1
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1.4k
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Answer: Answer: recount3 problem downloading data from source sra
21 months ago Leonardo Collado Torres ★ 1.1k
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0
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2.8k
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Comment: Comment: Downloading count matrix for full recount3 dataset
23 months ago Leonardo Collado Torres ★ 1.1k
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0
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1.1k
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Answer: Answer: Transcript level expression for CCLE
2.0 years ago Leonardo Collado Torres ★ 1.1k
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0
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1.5k
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Answer: Answer: TCGA counts to TPM from recount3 do not seem to right
2.3 years ago Leonardo Collado Torres ★ 1.1k
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0
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2.6k
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Answer: Answer: Recount3 error with default "recount3_url" option
2.8 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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1.5k
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Answer: Answer: Recount3 data download problem
2.8 years ago Leonardo Collado Torres ★ 1.1k
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0
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2.4k
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Answer: Answer: Unable to load data from duffel.rail
2.8 years ago Leonardo Collado Torres ★ 1.1k
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0
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2.9k
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Answer: Answer: Not able to download recount3 data
2.8 years ago Leonardo Collado Torres ★ 1.1k
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0
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1.4k
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Answer: Answer: Cannot download data from IDIES links
2.8 years ago Leonardo Collado Torres ★ 1.1k
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0
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1.9k
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Comment: Comment: BigWig files provided by recount3
2.9 years ago Leonardo Collado Torres ★ 1.1k
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1
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1.9k
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Answer: Answer: BigWig files provided by recount3
2.9 years ago Leonardo Collado Torres ★ 1.1k
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0
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2.9k
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Comment: Comment: Not able to download recount3 data
3.0 years ago Leonardo Collado Torres ★ 1.1k
0
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1
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2.9k
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Comment: Comment: Not able to download recount3 data
3.0 years ago Leonardo Collado Torres ★ 1.1k
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0
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1.9k
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Comment: Comment: recount 3 protect read length metadata
3.1 years ago Leonardo Collado Torres ★ 1.1k
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0
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1.9k
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Comment: Comment: recount 3 protect read length metadata
3.1 years ago Leonardo Collado Torres ★ 1.1k
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0
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1.4k
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Answer: Answer: Cannot download data from IDIES links
3.1 years ago Leonardo Collado Torres ★ 1.1k
0
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2
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2.9k
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Answer: Answer: Not able to download recount3 data
3.1 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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2.4k
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Answer: Answer: Unable to load data from duffel.rail
3.1 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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1.5k
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Answer: Answer: Recount3 data download problem
3.1 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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2.6k
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Answer: Answer: Recount3 error with default "recount3_url" option
3.1 years ago Leonardo Collado Torres ★ 1.1k
0
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0
replies
2.9k
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Answer: Answer: Not able to download recount3 data
3.2 years ago Leonardo Collado Torres ★ 1.1k
0
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1
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1.9k
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Comment: Comment: recount 3 protect read length metadata
3.2 years ago Leonardo Collado Torres ★ 1.1k
0
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1
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1.9k
views
Answer: Answer: recount 3 protect read length metadata
3.2 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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2.4k
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Answer: Answer: Unable to load data from duffel.rail
3.2 years ago Leonardo Collado Torres ★ 1.1k
1
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0
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2.4k
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Comment: Comment: Unable to load data from duffel.rail
3.2 years ago Leonardo Collado Torres ★ 1.1k
0
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1
reply
2.4k
views
Comment: Comment: Unable to load data from duffel.rail
3.2 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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1.6k
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Answer: Answer: searching study metadata in recount3
3.3 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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4.3k
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Comment: Comment: Counts from recount3 for DESeq2 analysis
3.5 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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1.4k
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Answer: Answer: recount3 transform_counts vs compute_read_counts
3.5 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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2.4k
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Comment: Comment: unable to install.packages("spatialLIBD")
3.5 years ago Leonardo Collado Torres ★ 1.1k
1
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0
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1.3k
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Answer: Answer: spot- vs cell-level data access
3.5 years ago Leonardo Collado Torres ★ 1.1k
1
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0
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2.4k
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Answer: Answer: unable to install.packages("spatialLIBD")
3.5 years ago Leonardo Collado Torres ★ 1.1k
0
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1
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3.9k
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Answer: Answer: Create TPM gene tables/dataframe from ReCount3
3.7 years ago Leonardo Collado Torres ★ 1.1k
1
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1
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4.3k
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Comment: Comment: Counts from recount3 for DESeq2 analysis
3.8 years ago Leonardo Collado Torres ★ 1.1k
2
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1
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4.3k
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Comment: Comment: Counts from recount3 for DESeq2 analysis
3.8 years ago Leonardo Collado Torres ★ 1.1k
0
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1
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1.7k
views
Answer: Answer: Missing sample in recount3 data
3.9 years ago Leonardo Collado Torres ★ 1.1k
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