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Answer: A: What assays are distributed with Recount TX data
5.5 years ago Leonardo Collado Torres ★ 1.1k
1
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2
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1.9k
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Answer: A: how to download bigwig from recount2?
5.6 years ago Leonardo Collado Torres ★ 1.1k
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1
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1.9k
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Answer: A: scale_counts targetSize normalization for recount2 counts
5.8 years ago Leonardo Collado Torres ★ 1.1k
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0
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1.2k
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Answer: A: Number of reads from recount are greater than target library size (40 million)
5.9 years ago Leonardo Collado Torres ★ 1.1k
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0
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1.7k
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Answer: A: Recount data for unannotated genes
5.9 years ago Leonardo Collado Torres ★ 1.1k
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0
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3.8k
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Answer: A: Is GTEx age and sex data available via the recount package?
6.4 years ago Leonardo Collado Torres ★ 1.1k
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0
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1.3k
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Answer: A: What does scaling RNASeq data using the area under coverage information (AUC) me
6.5 years ago Leonardo Collado Torres ★ 1.1k
0
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1
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1.4k
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Answer: A: According to Recount2 metadata and Recount2 website, SRP000941 has 345 samples,
7.0 years ago Leonardo Collado Torres ★ 1.1k
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1.3k
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Answer: A: Recount2 TCGA metadata missing sample, run and experiment columns
7.1 years ago Leonardo Collado Torres ★ 1.1k
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2.1k
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Answer: A: Hm... segfault when using qvalue 1.39.1, has anyone else encountered this?
7.1 years ago Leonardo Collado Torres ★ 1.1k
2
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1
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2.1k
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Answer: A: derfinder: how to merge regions and counts from individual chromosomes
7.3 years ago Leonardo Collado Torres ★ 1.1k
2
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0
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1.6k
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Answer: A: derfinder mean Expressed Region cutoff
7.3 years ago Leonardo Collado Torres ★ 1.1k
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1.4k
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Answer: A: Getting pheno tables from recount datasets without any NA values in characterist
7.3 years ago Leonardo Collado Torres ★ 1.1k
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2.4k
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Answer: A: Recount TCGA data
7.5 years ago Leonardo Collado Torres ★ 1.1k
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2
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1.6k
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Answer: A: How to preserve the strand of coverage in derfinder::regionMatrix() ?
7.5 years ago Leonardo Collado Torres ★ 1.1k
0
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2
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2.6k
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Answer: A: Matching columns to sample names
7.6 years ago Leonardo Collado Torres ★ 1.1k
2
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1
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3.0k
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Answer: A: IRanges error from derfinder analyzeChr with custom TxDb?
7.6 years ago Leonardo Collado Torres ★ 1.1k
1
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0
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1.4k
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Answer: A: Read normalization in derfinder
7.6 years ago Leonardo Collado Torres ★ 1.1k
2
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0
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1.2k
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Answer: A: Derinder options (species, annotations style)
7.6 years ago Leonardo Collado Torres ★ 1.1k
2
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1
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1.7k
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Answer: A: Number of IRanges elements in TCGA HiSeqV2 dataset
7.8 years ago Leonardo Collado Torres ★ 1.1k
0
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2
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2.3k
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Answer: A: recount counts in the example experiment
7.8 years ago Leonardo Collado Torres ★ 1.1k
0
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2
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2.6k
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Answer: A: regionMatrix for derfinder crashes with seqnames issue on non-human data
7.9 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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1.9k
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Answer: A: error with base-level DERfinder using large sample sizes
8.0 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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3.9k
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Answer: A: Error through importing (project = 'SRP009615') or even to download any BigWig F
8.0 years ago Leonardo Collado Torres ★ 1.1k
1
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1
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4.0k
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Answer: A: Issue creating a genomic state object in derfinder from an Ensembl GTF file
8.0 years ago Leonardo Collado Torres ★ 1.1k
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1.6k
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Answer: A: derfinder on bacteria PE strand specific RNA-seq
8.3 years ago Leonardo Collado Torres ★ 1.1k
1
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0
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5.2k
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Answer: A: Is it possible to read bigwig files with rtracklayer over https? Comes down to G
8.9 years ago Leonardo Collado Torres ★ 1.1k
2
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0
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2.5k
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Answer: A: derfinder gets stuck in calculatePvalues
9.8 years ago Leonardo Collado Torres ★ 1.1k
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0
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1.7k
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Answer: A: derfinder fails on findRegions step
9.8 years ago Leonardo Collado Torres ★ 1.1k
1
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1
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3.3k
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Answer: A: derfinder: analyzeChr() freezes in f-stat calculation
9.9 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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1.9k
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Answer: A: Error message suggestion for fullCoverage in derfinder
10.0 years ago Leonardo Collado Torres ★ 1.1k
1
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1
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2.8k
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Answer: A: derfinder failing in mergeResults()
10.0 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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3.3k
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Answer: A: Using bumphunter with non-human genomes
10.2 years ago Leonardo Collado Torres ★ 1.1k
1
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1
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2.5k
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Answer: A: bumphunter::annotateNearest with non-human genome
10.2 years ago Leonardo Collado Torres ★ 1.1k
1
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1
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5.4k
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Answer: A: derfinder: analyzeChr() breaks on chromosomes > 22
10.4 years ago Leonardo Collado Torres ★ 1.1k
4
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1
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3.8k
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Answer: A: derfinder: fullCoverage() problems
10.4 years ago Leonardo Collado Torres ★ 1.1k
0
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1
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2.3k
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Answer: A: derfinder and BAM indexes
10.4 years ago Leonardo Collado Torres ★ 1.1k
0
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1
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5.2k
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Answer: A: ggbio 1.12.0 autoplot() with txdb example is broken
10.9 years ago Leonardo Collado Torres ★ 1.1k
0
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1
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5.2k
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Answer: A: ggbio 1.12.0 autoplot() with txdb example is broken
10.9 years ago Leonardo Collado Torres ★ 1.1k
0
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1
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5.2k
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Answer: A: ggbio 1.12.0 autoplot() with txdb example is broken
10.9 years ago Leonardo Collado Torres ★ 1.1k
0
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0
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1.4k
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Answer: A: tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
11.3 years ago Leonardo Collado Torres ★ 1.1k
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