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1
vote
2
replies
1.8k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 6.3 years ago by 25k • written 6.3 years ago by ★ 1.1k
1
vote
5
replies
2.1k
views
Hm... segfault when using qvalue 1.39.1, has anyone else encountered this?
qvalue segfault
10.4 years ago • updated 7.1 years ago Leonardo Collado Torres ★ 1.1k
1
vote
3
replies
1.1k
views
Time-course group difference analysis with repeated individuals using limma-voom
limma
updated 7.3 years ago by ★ 28k • written 7.3 years ago by ★ 1.1k
1
vote
0
replies
1.7k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene
7.5 years ago Leonardo Collado Torres ★ 1.1k
3
votes
2
replies
2.0k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools rmarkdown
updated 7.8 years ago by ▴ 750 • written 7.8 years ago by ★ 1.1k
1
vote
10
replies
4.0k
views
Issue creating a genomic state object in derfinder from an Ensembl GTF file
derfinder genomicfeatures
8.1 years ago Leonardo Collado Torres ★ 1.1k
2
votes
2
replies
2.1k
views
Understanding the height in sashimi plots made by Gviz
Gviz
updated 8.3 years ago by ▴ 750 • written 8.3 years ago by ★ 1.1k
2
votes
6
replies
4.3k
views
Getting a flat metadata table from the XML files in TCGA: is it feasible?
tcgabiolinks
updated 8.4 years ago by ▴ 260 • written 8.4 years ago by ★ 1.1k
3
votes
7
replies
5.2k
views
Getting the metadata for a RNA-seq sample from TCGA when you have the uuid
tcgabiolinks tcgadownload
updated 8.4 years ago by ▴ 260 • written 8.4 years ago by ★ 1.1k
3
votes
2
replies
1.9k
views
Proper way to read in a DataFrame with CharacterList columns that was saved to a text file
s4vectors genomicranges
updated 8.8 years ago by ★ 11k • written 8.8 years ago by ★ 1.1k
4
votes
9
replies
5.2k
views
Is it possible to read bigwig files with rtracklayer over https? Comes down to GenomeInfoDb::seqinfo()
rtracklayer genomeinfodb
8.9 years ago Leonardo Collado Torres ★ 1.1k
2
votes
30
replies
5.2k
views
ggbio 1.12.0 autoplot() with txdb example is broken
TranscriptDb TranscriptDb
updated 10.9 years ago by ▴ 490 • written 10.9 years ago by ★ 1.1k
0
votes
2
replies
1.7k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb ideogram TranscriptDb ideogram
updated 11.3 years ago by ▴ 490 • written 11.3 years ago by ★ 1.1k
0
votes
3
replies
2.3k
views
autoplot() error on a GRanges object in ggbio 1.10.8
Annotation TranscriptDb Annotation TranscriptDb
updated 11.3 years ago by ▴ 490 • written 11.3 years ago by ★ 1.1k
0
votes
8
replies
1.7k
views
ggbio::plotIdeogram() not working on R 3.0.2
updated 11.4 years ago by ▴ 490 • written 11.4 years ago by ★ 1.1k
0
votes
2
replies
1.6k
views
Calculating quantiles from very long Rle's that need to be aggregated
updated 11.4 years ago by ★ 11k • written 11.4 years ago by ★ 1.1k
0
votes
3
replies
3.6k
views
Trying to use the liftOver function from the rtracklayer package in R 2.14.0
PROcess rtracklayer bumphunter PROcess rtracklayer bumphunter
updated 13.3 years ago by ★ 11k • written 13.3 years ago by ★ 1.1k
0
votes
1
reply
1.4k
views
biomaRt issues
Organism biomaRt Organism biomaRt
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ★ 1.1k
18 results • Page 1 of 1
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