User: Mahnaz Kiani

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Mahnaz Kiani20
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1 month, 2 weeks ago
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3 years, 6 months ago
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m**********@gmail.com

Posts by Mahnaz Kiani

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Using multiple factor analysis in edgeR
... That is right, samples 1/4/7 are from different plants, same genotype. ...
written 7 weeks ago by Mahnaz Kiani20
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Comment: C: Using multiple factor analysis in edgeR
... Thnk you, the table that you asked is as follows: ...
written 7 weeks ago by Mahnaz Kiani20
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Answer: A: Using multiple factor analysis in edgeR
... Sample Stem Part Genotype Group Biological rep 1 1 A 1 1 2 1 A 1 2 3 1 A 1 3 4 2 A 2 1 5 2 A 2 2 6 2 A 2 3 7 3 A 3 1 8 3 ...
written 7 weeks ago by Mahnaz Kiani20
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Comment: C: Using multiple factor analysis in edgeR
... Thank you for your answer, I do have different factor, I have two genotypes and 3 sampling from a different part of the plant in each genotype. I want to analyze both genotypes together using factor analysis with a genotype: stage interaction term. I did the analysis before using CLC genomics workbe ...
written 7 weeks ago by Mahnaz Kiani20
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Using multiple factor analysis in edgeR
... Hello,   I am trying to analyze my data based on section 3.3 of edgeR and I got stuck in the fist part design <- model.matrix(~0+Group)  colnames(design) <- levels(Group) fit <- glmQLFit(y, design)   and getting this error : Error in terms.formula(object, data = data) : object 'y' no ...
edger written 7 weeks ago by Mahnaz Kiani20
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Answer: A: total count filter cutoff
... Thanks so much all of you for good recommendation, really apppriciate you time. Regards, Mahnaz On Mon, May 5, 2014 at 4:33 PM, Wolfgang Huber wrote: > This thread has accumulated a good number of opinions and speculations > what the best filter criterion and cutoff value is. > The "ge ...
written 3.6 years ago by Mahnaz Kiani20
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Comment: C: total count filter cutoff
... Thanks for quick response, I did check that but didn't find any information about total count filter cutoff, would you please help me with that. Thanks, Mahnaz On Wed, Apr 30, 2014 at 1:47 PM, Wolfgang Huber wrote: > Dear Mahnaz > http://bioconductor.org/packages/release/bioc/html/genefil ...
written 3.6 years ago by Mahnaz Kiani20

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