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User: Konika Chawla

gravatar for Konika Chawla
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2 years, 5 months ago
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Posts by Konika Chawla

<prev • 3 results • page 1 of 1 • next >
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Answer: A: RNAseq, what to do if you have no replicates in voom-limma
... I also have similar situation  only one replicate per sample. But I can run voom if I donot specify design and keep plot=TRUE (optional). This plots the graph for variance in different samples for each miRNA mean expression value (or similar). I am now trying to calculate the variation separately a ...
written 2.4 years ago by Konika Chawla20
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Genes2GO and suggestions to make it faster
... Hi, I have created this webapp (http://norstore-trd-bio0.hpc.ntnu.no:8080/Genes2GO/clearpage.do) to makes a binary matrix between user specified genes and user selected GO term to represent the gene annotations by either 1 or 0. Users can also specify just some query terms and the program will find ...
annotation go process biomart written 4.5 years ago by Konika Chawla20 • updated 4.5 years ago by Sean Davis21k
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top table or anova?
... Hi I have a microarray data comprised of 3 treatment conditions (N,M,I) and 2 time points (4dpi and 5dpi). I used limma - ebayes fit and toptable with coefficient for a specific contrast to get the differentially expressed genes and adjusted P value. I also did a ANOVA test, and I want to know which ...
microarray limma written 4.6 years ago by Konika Chawla20 • updated 4.6 years ago by James W. MacDonald49k

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