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Posts by david.hughes
... Aaron, Gordon: many thanks. ...
... We use edgeR for its GLM fitting. When we present lists of differentially-expressed genes, colleagues ask to see the raw expression data, sometimes for all replicates. We usually show the counts-per-million of the fitted data: eg. class(y) #”DGEList” fit <- glmFit(y, design, …) ...
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