User: Mayte

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Mayte0
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Posts by Mayte

<prev • 5 results • page 1 of 1 • next >
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Comment: C: easyRNAseq says Your annotation is not in sync with your alignments!
... 1 1 day ago by Mayte • 0 United States Hej Nico Thanks for your answer. I took the time to figure the simpleRNASeq function and took your advice on the annotation. I got a msg error that I can not figure it out. I include the litle code, the error msg and the sessionInfo bellow. Hope you ca ...
written 4.3 years ago by Mayte0
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Answer: A: easyRNAseq says Your annotation is not in sync with your alignments!
... Hej Nico Thanks for your answer. I took the time to figure the simpleRNASeq function and took your advice on the annotation. I got a msg error that I can not figure it out. I include the litle code, the error msg and the sessionInfo bellow. Hope you can be as helpful as always! Best Mayte   lib ...
written 4.3 years ago by Mayte0
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easyRNAseq says Your annotation is not in sync with your alignments!
... Dear Bioconducters    I was using easyRNAseq to get the matrix counts from Bam files, which where obtained using  STAR to do the mapping with hg19 as reference.  CountsGenes_biomart <- easyRNASeq(   filesDirectory=BamPath,  filenames=fls.bam,   nbCore=6,  organism='Hsapiens',  gapped = TRUE,  ...
easyrnaseq written 4.3 years ago by Mayte0 • updated 4.3 years ago by Nicolas Delhomme320
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Answer: A: Reporting Tools error
... I did as you suggested. still it does not run. I think it is the summary function called by ReportingTools. I am pasting the whole session to see if someone can see what the problem is. otherwise I guess I have to reinstall everything and see what happens.   library(GOstats) Loading required pack ...
written 4.7 years ago by Mayte0 • updated 4.7 years ago by Martin Morgan ♦♦ 23k
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Reporting Tools error
... Hi I am having problems with reporting tools.To be simple I am including the same example as in Category package and then try to do html with Reporting Tools but I get an error.  (R studio sometimes crashes with this) any help is appreciated. Mayte library("hgu95av2.db") library("annotate") pro ...
reporting tools written 4.7 years ago by Mayte0 • updated 4.1 years ago by Mayte Suarez-Farinas510

Latest awards to Mayte

Popular Question 4.3 years ago, created a question with more than 1,000 views. For Reporting Tools error
Scholar 4.3 years ago, created an answer that has been accepted. For A: easyRNAseq says Your annotation is not in sync with your alignments!

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