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Comment:
C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
8.9 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.2k
views
Comment:
C: Filtering out lowly expressed genes on Affymetrix Gene ST arrays
8.9 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
14k
views
Comment:
C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
8.9 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.0 years ago
Stephen Piccolo
▴ 590
1
vote
1
reply
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.0 years ago
Stephen Piccolo
▴ 590
1
vote
1
reply
2.7k
views
Answer:
A: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.5k
views
Comment:
C: UPC and Sequence file to remove GC bias
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.5k
views
Answer:
A: UPC and Sequence file to remove GC bias
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.6k
views
Comment:
C: SCAN UPC normalisation
9.0 years ago
Stephen Piccolo
▴ 590
1
vote
1
reply
5.2k
views
Comment:
C: How to use brainarray custom cdf with any bioconductor package?
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
5.2k
views
Comment:
C: How to use brainarray custom cdf with any bioconductor package?
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
5.2k
views
Comment:
C: How to use brainarray custom cdf with any bioconductor package?
9.0 years ago
Stephen Piccolo
▴ 590
1
vote
0
replies
1.6k
views
Answer:
A: SCAN UPC normalisation
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
14k
views
Comment:
C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
9.1 years ago
Stephen Piccolo
▴ 590
4
votes
3
replies
14k
views
Answer:
A: Can I feed TCGA normalized count data to EdgeR for differential gene expression
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
2
replies
3.4k
views
Comment:
C: GeneChip Human Transcriptome Array 2.0 analysis in R for identifying possible di
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
Stephen Piccolo
▴ 590
0
votes
0
replies
1.2k
views
Answer:
A: SCAN.UPC for Agilent single channel and Illumina
9.2 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.5k
views
Comment:
C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
9.2 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
2.5k
views
Comment:
C: Questions about analysis of GeneChip Rat Gene 2.0 ST Array
9.2 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
2.8k
views
Comment:
C: SCAN.UPC: exception thrown when loading GEOQuery
9.3 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
5.2k
views
Answer:
A: How to use brainarray custom cdf with any bioconductor package?
9.4 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.7k
views
Answer:
A: how to normalize mogene 2.1 st array?
9.4 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
3.2k
views
Comment:
C: Normalizing Expressionset Exprs without Raw CEL files
9.5 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
3.2k
views
Comment:
C: Normalizing Expressionset Exprs without Raw CEL files
9.5 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
3.2k
views
Answer:
A: Normalizing Expressionset Exprs without Raw CEL files
9.5 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.9k
views
Filtering pmSequence based on probe target level for HTA 2.0 arrays
Annotation
probe
oligo
Annotation
probe
oligo
updated 9.7 years ago by
James W. MacDonald
65k • written 9.7 years ago by
Stephen Piccolo
▴ 590
0
votes
1
reply
1.8k
views
Comment:
C: SCAN.UPC for microarray and RNAseq data
9.8 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.8k
views
Comment:
C: SCAN.UPC for microarray and RNAseq data
9.8 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.8k
views
Answer:
A: SCAN.UPC for microarray and RNAseq data
9.8 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
880
views
FYI: SCAN.UPC and HuGene 1/2 arrays
SCAN.UPC
SCAN.UPC
9.8 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.2k
views
Duplicate probe coordinates with pd.hugene.2.1.st and oligo
probe
affy
PROcess
oligo
probe
affy
PROcess
oligo
updated 9.9 years ago by
James W. MacDonald
65k • written 9.9 years ago by
Stephen Piccolo
▴ 590
0
votes
0
replies
1.3k
views
Answer:
A: Normalising both Affy mogene 1.0 and 1.1 together
9.9 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.1k
views
oligo package - Unable to read HT-U133A CEL files
affy
oligo
affy
oligo
updated 9.9 years ago by
Benilton Carvalho
★ 4.3k • written 10.0 years ago by
Stephen Piccolo
▴ 590
0
votes
0
replies
1.4k
views
Answer:
A: Comparison of murine and human microarray data
10.0 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.3k
views
Answer:
A: Memory problem with rma()
10.2 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
2.4k
views
Comment:
C: using frma and brainarray cdf on exon arrays
10.3 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.4k
views
Comment:
C: using frma and brainarray cdf on exon arrays
10.3 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.4k
views
Answer:
A: using frma and brainarray cdf on exon arrays
10.3 years ago
Stephen Piccolo
▴ 590
0
votes
2
replies
1.7k
views
Answer:
A: SCAN.UPC for Illumina arrays?
10.4 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.8k
views
Comment:
C: help with SCAN.UPC and u133aaofav2
10.5 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.8k
views
Answer:
A: help with SCAN.UPC and u133aaofav2
10.5 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.5k
views
Answer:
A: SCAN.UPC vs NUSE
10.6 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.5k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
Normalization
hgu133a
probe
affy
PROcess
SCAN.UPC
Normalization
hgu133a
probe
affy
updated 10.9 years ago by
Andrew Yates
▴ 20 • written 10.9 years ago by
Stephen Piccolo
▴ 590
0
votes
0
replies
1.5k
views
Answer:
A: barcode with custom CDF
11.1 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.4k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
hgu133a
probe
affy
SCAN.UPC
hgu133a
probe
affy
SCAN.UPC
updated 11.1 years ago by
Andrew Yates
▴ 20 • written 11.1 years ago by
Stephen Piccolo
▴ 590
0
votes
0
replies
1.3k
views
Answer:
A: bout big data set for Affy R packge
11.3 years ago
Stephen Piccolo
▴ 590
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