User: Panagiotis Moulos

Reputation:
30
Status:
New User
Location:
Greece
Last seen:
3 years, 7 months ago
Joined:
4 years, 6 months ago
Email:
m*****@fleming.gr

Posts by Panagiotis Moulos

<prev • 6 results • page 1 of 1 • next >
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Comment: C: meta-analysis of RNA-seq data
... You could have a look at the package metaSeq. ...
written 4.1 years ago by Panagiotis Moulos30
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Answer: A: ChipPeakAnno:getAnnotation using UCSC instead of ensembl
... Hello, You can use the function get.annotation from the package metaseqR. The call should be ann <- get.annotation("mm9","gene",refdb="ucsc") for a simple data frame which looks like a bed file with locations, gene names and also the biotype categorization from Ensembl. One of the packages RM ...
written 4.2 years ago by Panagiotis Moulos30
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Comment: C: RMySQL availiability with Bioconductor 3.0
... Martin, thank you very much for your extensive reply. It's now clear that if I want the package to be flawlessly available to as many users as possible, I have to find a way to bypass the need for RMySQL, with some less elegant solution. ...
written 4.5 years ago by Panagiotis Moulos30
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Comment: C: RMySQL availiability with Bioconductor 3.0
... Hi, yes, actually the package under circumstances connects to the UCSC Genome Browser database, over the web. I am not sure if this can be achieved with RSQLite. ...
written 4.5 years ago by Panagiotis Moulos30
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Answer: A: ggbio: examples of overlaying multiple assay datasets
... Hello Abhi. ggbio plots are highly customizable and maybe is hard to find an example that does exactly what you want. A very useful starting point is the vignette of ggbio. Now, the following example does not display data in circular plots but in a karyogram (which may also fit your needs). However ...
written 4.5 years ago by Panagiotis Moulos30
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RMySQL availiability with Bioconductor 3.0
... Dear all, I made some functionality updates to my package metaseqR which use and depend on the package RMySQL. The lateset check results indicate check errors in Windows and Mac OS X Mavericks. I know that RMySQL is a CRAN package for which currently, there are no devel binaries for the respective ...
install rmysql windows written 4.5 years ago by Panagiotis Moulos30 • updated 4.5 years ago by Martin Morgan ♦♦ 23k

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