User: bdk

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bdk0
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Posts by bdk

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Answer: A: Error with Diffbind
... I was trying to generate contrast  from above file. hox = dba.contrast(hox,categories = DBA_FACTOR) Warning message: No contrasts added. Perhaps try more categories, or lower value for minMembers   Thanks for any help. Bony ...
written 4.2 years ago by bdk0
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Answer: A: Error with Diffbind
... Thanks a lot. It works. Bony ...
written 4.2 years ago by bdk0
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Error with Diffbind
... I was trying to use Diffbind package and could not move beyond three steps.  I can see that dba object is created but without any metadata. I think that is what causing problem. Thanks for any help. Bony  > samples = read.csv(file.path("/n/projects/bdk/fly/chip_seq_final/","Book1.csv")) > ...
diffbind written 4.2 years ago by bdk0 • updated 4.2 years ago by Rory Stark2.9k
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error running Chipseeker
... Loading required package: IRanges Loading required package: GenomeInfoDb > med1 = read.delim("Mediator1.macs2_peaks.xls", skip = 25, header = TRUE) > head(med1) chr start end length abs_summit pileup X.log10.pvalue. fold_enrichment 1 chr1 3295813 3296012 200 3295920 16 ...
annotation chipseeker written 5.1 years ago by bdk0 • updated 5.1 years ago by Martin Morgan ♦♦ 24k

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Popular Question 4.2 years ago, created a question with more than 1,000 views. For Error with Diffbind

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