User: Jan Oosting

gravatar for Jan Oosting
Jan Oosting20
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Location:
Netherlands
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1 year, 6 months ago
Joined:
5 years, 2 months ago
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j**********@gmail.com

Posts by Jan Oosting

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Answer: A: DNAcopy: Using log-ratios and B-allele frequencies
... The segmentate function in the beadarraySNP package can use LAIR (a B-allele derivative) to improve segmentation. It actually segmentates the copy number signal first, and splits segments if subsegmenst are found with differing B-alleles ...
written 4.2 years ago by Jan Oosting20
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Answer: A: quantsmooth chromosome sizes problem (genome release specification possible ?)
... I have updated the quantsmooth package for the new version of Bioconductor to address this issue.  In the new version you can either use the annotation for the last few human genome versions or supply the data yourself.  ...
written 5.2 years ago by Jan Oosting20

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