User: Ting

gravatar for Ting
Ting10
Reputation:
10
Status:
New User
Location:
United States
Last seen:
4 years, 10 months ago
Joined:
4 years, 11 months ago
Email:
t*******@vt.edu

Posts by Ting

<prev • 6 results • page 1 of 1 • next >
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Comment: C: how to use biomaRt with ensembl build 37
... Hi, Pablo Thanks for your question. I encountered the same problem that I got quite different results using biomaRt now than about a month ago. And regarding this circularity thing, in function listMarts, you can specify 'host' and 'path' like what you do in function useMart. listMarts(host="grc ...
written 4.8 years ago by Ting10
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Comment: C: biomaRt error message
... Yes that helps! Thank you very much! Sincerely, Ting ...
written 4.8 years ago by Ting10
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biomaRt error message
... Hi, all I'm trying to get some snp information, such as ID, position, etc., from biomaRt. The code I'm using is attached below: > require(biomaRt) > mart <- useMart("snp") > dataset <- useDataset("hsapiens_snp", mart=mart) > snps.chr22 <- getBM(attributes=c('refsnp_id', 'c ...
snp biomart written 4.8 years ago by Ting10 • updated 4.8 years ago by Thomas Maurel770
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Comment: C: SNP Function Information from biomaRt
... Thanks!!! That's really helpful! ...
written 4.9 years ago by Ting10
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Comment: C: SNP Function Information from biomaRt
... Hi, James Thank you for your response! So now I see that my code did bring me to the right place. And the next step is to recognize which of these variant types belong to nonsynonymous group. But I'm a statistician. Even though I'm taking biology class, it's still difficult for me to tell if some g ...
written 4.9 years ago by Ting10
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SNP Function Information from biomaRt
... Hi, all I'm trying to get function information,  nonsynonymous or synonymous, of all coding-area SNPs in chromosome 22 from biomaRt. The code I tried is as below: > require(biomaRt) > mart <- useMart("snp") > dataset <- useDataset("hsapiens_snp", mart=mart) > filters <- lis ...
snp biomart nonsynonymous written 4.9 years ago by Ting10 • updated 4.9 years ago by Sean Davis21k

Latest awards to Ting

Popular Question 4.8 years ago, created a question with more than 1,000 views. For biomaRt error message
Popular Question 4.8 years ago, created a question with more than 1,000 views. For SNP Function Information from biomaRt

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