User: malbert1

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malbert10
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Posts by malbert1

<prev • 5 results • page 1 of 1 • next >
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Answer: A: MEDIPS - RPKM
... Thanks for your reply Lukas and sorry for the confusion!  Cheers, Maria   ...
written 4.6 years ago by malbert10
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MEDIPS - RPKM
... I was hoping someone could please help explain how RPKM values are calculated using the MEDIPS package? From the source code (v1.16) it says RPKM values are calculated the following way:  (genome_count(Set)*10^9)/(window_size*number_regions(Set)) I am assuming that genome_count(Set) is referring ...
medips written 4.6 years ago by malbert10
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Bioconductor source code - Errno::ECONNREFUSED in Codes#show
... Dear.. I am looking for the MEDIPS bioconductor source code for the MEDIPS.couplingVector function (and any other MEDIPS source code) but get the following error: Errno::ECONNREFUSED in Codes#show Showing /data/itoshi/search.bioconductor.jp/search/app/views/codes/show.html.erb where line #38 rais ...
medips error bioconductor source code written 4.9 years ago by malbert10
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Answer: A: MEDIPS: Export rms values as Wiggle for visualization in UCSC
... Thank you Lukas, much appreciated!!   ...
written 4.9 years ago by malbert10
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MEDIPS: Export rms values as Wiggle for visualization in UCSC
... Dear.. I would like to view pDensity, RPKM and rms values  in the UCSC genome browser. For generation of RPKM and pDensity Wiggle files I followed the 7.2 "Export Wiggle Files" workflow as described in the MEDIPS tutorial, which woked well. Next, I would like to also add rms values as a costum trac ...
medips written 5.0 years ago by malbert10

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